Github user mengxr commented on a diff in the pull request:

    https://github.com/apache/spark/pull/6054#discussion_r35280635
  
    --- Diff: 
mllib/src/main/scala/org/apache/spark/mllib/clustering/PowerIterationClustering.scala
 ---
    @@ -213,6 +234,29 @@ object PowerIterationClustering extends Logging {
       case class Assignment(id: Long, cluster: Int)
     
       /**
    +   * Normalizes the affinity graph (A) and returns the normalized affinity 
matrix (W).
    +   */
    +  private[clustering]
    +  def normalize(graph: Graph[Double, Double]): Graph[Double, Double] = {
    +    val vD = graph.aggregateMessages[Double](
    +      sendMsg = ctx => {
    +        val i = ctx.srcId
    +        val j = ctx.dstId
    +        val s = ctx.attr
    +        if (s < 0.0) {
    +          throw new SparkException("Similarity must be nonnegative but 
found s($i, $j) = $s.")
    +        }
    +        ctx.sendToSrc(s)
    --- End diff --
    
    We allow explicit zero similarities from input. But zero edges could be 
filtered out at this stage.


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