GitHub user chenghao-intel opened a pull request:
https://github.com/apache/spark/pull/8128
[SPARK-9879][SQL] Fix OOM in Limit clause with large number
```
create table tablsetest as select * from dpa_ord_bill_tf order by member_id
limit 20000000
```
It causes OOM, and the error log as below:
```
15/07/27 10:22:43 ERROR ActorSystemImpl: Uncaught fatal error from thread
[sparkDriver-akka.actor.default-dispatcher-20]shutting down ActorSystem
[sparkDriver]
java.lang.OutOfMemoryError: Requested array size exceeds VM limit
at java.util.Arrays.copyOf(Arrays.java:2271)
at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:113)
at
java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:140)
at
java.io.ObjectOutputStream$BlockDataOutputStream.write(ObjectOutputStream.java:1852)
at java.io.ObjectOutputStream.write(ObjectOutputStream.java:708)
at org.apache.spark.util.Utils$$anon$2.write(Utils.scala:134)
at com.esotericsoftware.kryo.io.Output.flush(Output.java:155)
at com.esotericsoftware.kryo.io.Output.close(Output.java:165)
at
org.apache.spark.serializer.KryoSerializationStream.close(KryoSerializer.scala:162)
at org.apache.spark.util.Utils$.serializeViaNestedStream(Utils.scala:139)
at
org.apache.spark.rdd.ParallelCollectionPartition$$anonfun$writeObject$1.apply$mcV$sp(ParallelCollectionRDD.scala:65)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1239)
at
org.apache.spark.rdd.ParallelCollectionPartition.writeObject(ParallelCollectionRDD.scala:51)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:988)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1495)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at
java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
at
org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
at
org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:81)
at
org.apache.spark.scheduler.Task$.serializeWithDependencies(Task.scala:168)
at
org.apache.spark.scheduler.TaskSetManager.resourceOffer(TaskSetManager.scala:467)
at
org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$org$apache$spark$scheduler$TaskSchedulerImpl$$resourceOfferSingleTaskSet$1.apply$mcVI$sp(TaskSchedulerImpl.scala:231)
15/07/27 10:22:43 ERROR ErrorMonitor: Uncaught fatal error from thread
[sparkDriver-akka.actor.default-dispatcher-20]shutting down ActorSystem
[sparkDriver]
java.lang.OutOfMemoryError: Requested array size exceeds VM limit
at java.util.Arrays.copyOf(Arrays.java:2271)
at java.io.ByteArrayOutputStream.grow(ByteArrayOutputStream.java:113)
at
java.io.ByteArrayOutputStream.ensureCapacity(ByteArrayOutputStream.java:93)
at java.io.ByteArrayOutputStream.write(ByteArrayOutputStream.java:140)
at
java.io.ObjectOutputStream$BlockDataOutputStream.write(ObjectOutputStream.java:1852)
at java.io.ObjectOutputStream.write(ObjectOutputStream.java:708)
at org.apache.spark.util.Utils$$anon$2.write(Utils.scala:134)
at com.esotericsoftware.kryo.io.Output.flush(Output.java:155)
at com.esotericsoftware.kryo.io.Output.close(Output.java:165)
at
org.apache.spark.serializer.KryoSerializationStream.close(KryoSerializer.scala:162)
at org.apache.spark.util.Utils$.serializeViaNestedStream(Utils.scala:139)
at
org.apache.spark.rdd.ParallelCollectionPartition$$anonfun$writeObject$1.apply$mcV$sp(ParallelCollectionRDD.scala:65)
at org.apache.spark.util.Utils$.tryOrIOException(Utils.scala:1239)
at
org.apache.spark.rdd.ParallelCollectionPartition.writeObject(ParallelCollectionRDD.scala:51)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:606)
at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:988)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1495)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at
java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1547)
at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1508)
at
java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1431)
at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1177)
at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:347)
at
org.apache.spark.serializer.JavaSerializationStream.writeObject(JavaSerializer.scala:44)
at
org.apache.spark.serializer.JavaSerializerInstance.serialize(JavaSerializer.scala:81)
at
org.apache.spark.scheduler.Task$.serializeWithDependencies(Task.scala:168)
at
org.apache.spark.scheduler.TaskSetManager.resourceOffer(TaskSetManager.scala:467)
at
org.apache.spark.scheduler.TaskSchedulerImpl$$anonfun$org$apache$spark$scheduler$TaskSchedulerImpl$$resourceOfferSingleTaskSet$1.apply$mcVI$sp(TaskSchedulerImpl.scala:231)
15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Shutting
down remote daemon.
15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Remote
daemon shut down; proceeding with flushing remote transports.
15/07/27 10:22:46 WARN AkkaRpcEndpointRef: Error sending message [message =
RemoveBroadcast(2,true)] in 1 attempts
akka.pattern.AskTimeoutException:
Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764] had
already been terminated.
at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
at
org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
at
org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
at
org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
at
org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
at
org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
at
org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
15/07/27 10:22:46 INFO RemoteActorRefProvider$RemotingTerminator: Remoting
shut down.
15/07/27 10:22:49 WARN AkkaRpcEndpointRef: Error sending message [message =
RemoveBroadcast(2,true)] in 2 attempts
akka.pattern.AskTimeoutException:
Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764] had
already been terminated.
at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
at
org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
at
org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
at
org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
at
org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
at
org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
at
org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
15/07/27 10:22:52 WARN AkkaRpcEndpointRef: Error sending message [message =
RemoveBroadcast(2,true)] in 3 attempts
akka.pattern.AskTimeoutException:
Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764] had
already been terminated.
at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
at
org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
at
org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
at
org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
at
org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
at
org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
at
org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
15/07/27 10:22:55 ERROR ContextCleaner: Error cleaning broadcast 2
org.apache.spark.SparkException: Error sending message [message =
RemoveBroadcast(2,true)]
at
org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:116)
at org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:78)
at
org.apache.spark.storage.BlockManagerMaster.removeBroadcast(BlockManagerMaster.scala:127)
at
org.apache.spark.broadcast.TorrentBroadcast$.unpersist(TorrentBroadcast.scala:228)
at
org.apache.spark.broadcast.TorrentBroadcastFactory.unbroadcast(TorrentBroadcastFactory.scala:45)
at
org.apache.spark.broadcast.BroadcastManager.unbroadcast(BroadcastManager.scala:66)
at
org.apache.spark.ContextCleaner.doCleanupBroadcast(ContextCleaner.scala:214)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:170)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1$$anonfun$apply$mcV$sp$2.apply(ContextCleaner.scala:161)
at scala.Option.foreach(Option.scala:236)
at
org.apache.spark.ContextCleaner$$anonfun$org$apache$spark$ContextCleaner$$keepCleaning$1.apply$mcV$sp(ContextCleaner.scala:161)
at org.apache.spark.util.Utils$.tryOrStopSparkContext(Utils.scala:1215)
at
org.apache.spark.ContextCleaner.org$apache$spark$ContextCleaner$$keepCleaning(ContextCleaner.scala:154)
at org.apache.spark.ContextCleaner$$anon$3.run(ContextCleaner.scala:67)
Caused by: akka.pattern.AskTimeoutException:
Recipient[Actorakka://sparkDriver/user/BlockManagerMaster#2011779764] had
already been terminated.
at akka.pattern.AskableActorRef$.ask$extension(AskSupport.scala:132)
at org.apache.spark.rpc.akka.AkkaRpcEndpointRef.ask(AkkaRpcEnv.scala:299)
at
org.apache.spark.rpc.RpcEndpointRef.askWithRetry(RpcEndpointRef.scala:101)
... 13 more
```
You can merge this pull request into a Git repository by running:
$ git pull https://github.com/chenghao-intel/spark limit
Alternatively you can review and apply these changes as the patch at:
https://github.com/apache/spark/pull/8128.patch
To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:
This closes #8128
----
commit 50b33d80532c20c074b6973bf124b5391df17fca
Author: Cheng Hao <[email protected]>
Date: 2015-08-12T14:26:55Z
Fix OOM in Limit clause with large number
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