Github user mengxr commented on the pull request:

    https://github.com/apache/spark/pull/12299#issuecomment-208454483
  
    @srowen Determining the sparsity by the first row is not very reliable. I 
checked out the stable online covariance computation 
(https://en.wikipedia.org/wiki/Algorithms_for_calculating_variance#Covariance) 
and making it work for sparse data is not trivial. I wonder whether we should 
go with a possibly inaccurate sparse implementation or treating all vectors as 
dense and implement a "correct" version.


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