Github user felixcheung commented on the issue:
https://github.com/apache/spark/pull/14177
No luck, but I push that change to see if it works better in Jenkins - is
that what you are referring to?
I'm consistently getting these errors:
```
Error in invokeJava(isStatic = TRUE, className, methodName, ...) :
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at
org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at
org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at
org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at
org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at
org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at org.apache.spark.sql.hive.HiveSharedState.externa
Calls: test_package ... with_reporter -> force -> source_file -> eval ->
eval
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.spark.sql.hive.client.IsolatedClientLoader.createClient(IsolatedClientLoader.scala:264)
at
org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:358)
at
org.apache.spark.sql.hive.HiveUtils$.newClientForMetadata(HiveUtils.scala:262)
at
org.apache.spark.sql.hive.HiveSharedState.metadataHive$lzycompute(HiveSharedState.scala:39)
at
org.apache.spark.sql.hive.HiveSharedState.metadataHive(HiveSharedState.scala:38)
at
org.apache.spark.sql.hive.HiveSharedState.externalCatalog$lzycompute(HiveSharedState.scala:46)
at
org.apache.spark.sql.hive.HiveSharedState.externalCatalog(HiveSharedState.scala:45)
at
org.apache.spark.sql.hive.HiveSessionState.catalog$lzycompute(HiveSessionState.scala:50)
at
org.apache.spark.sql.hive.HiveSessionState.catalog(HiveSessionState.scala:48)
at
org.apache.spark.sql.hive.HiveSessionState$$anon$1.<init>(HiveSessionState.scala:63)
at
org.apache.spark.sql.hive.HiveSessionState.analyzer$lzycompute(HiveSessionState.scala:63)
at
org.apache.spark.sql.hive.HiveSessionState.analyzer(HiveSessionState.scala:62)
at
org.apache.spark.sql.execution.QueryExecution.assertAnalyzed(QueryExecution.scala:49)
at org.apache.spark.sql.Dataset$.ofRows(Dataset.scala:64)
at
org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:527)
at
org.apache.spark.sql.SparkSession.createDataFrame(SparkSession.scala:291)
at org.apache.spark.sql.api.r.SQLUtils$.createDF(SQLUtils.scala:139)
at org.apache.spark.sql.api.r.SQLUtils.createDF(SQLUtils.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at
org.apache.spark.api.r.RBackendHandler.handleMethodCall(RBackendHandler.scala:141)
at
org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:86)
at
org.apache.spark.api.r.RBackendHandler.channelRead0(RBackendHandler.scala:38)
at
io.netty.channel.SimpleChannelInboundHandler.channelRead(SimpleChannelInboundHandler.java:105)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at
io.netty.handler.codec.MessageToMessageDecoder.channelRead(MessageToMessageDecoder.java:103)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at
io.netty.handler.codec.ByteToMessageDecoder.channelRead(ByteToMessageDecoder.java:244)
at
io.netty.channel.AbstractChannelHandlerContext.invokeChannelRead(AbstractChannelHandlerContext.java:308)
at
io.netty.channel.AbstractChannelHandlerContext.fireChannelRead(AbstractChannelHandlerContext.java:294)
at
io.netty.channel.DefaultChannelPipeline.fireChannelRead(DefaultChannelPipeline.java:846)
at
io.netty.channel.nio.AbstractNioByteChannel$NioByteUnsafe.read(AbstractNioByteChannel.java:131)
at
io.netty.channel.nio.NioEventLoop.processSelectedKey(NioEventLoop.java:511)
at
io.netty.channel.nio.NioEventLoop.processSelectedKeysOptimized(NioEventLoop.java:468)
at
io.netty.channel.nio.NioEventLoop.processSelectedKeys(NioEventLoop.java:382)
at io.netty.channel.nio.NioEventLoop.run(NioEventLoop.java:354)
at
io.netty.util.concurrent.SingleThreadEventExecutor$2.run(SingleThreadEventExecutor.java:111)
at
io.netty.util.concurrent.DefaultThreadFactory$DefaultRunnableDecorator.run(DefaultThreadFactory.java:137)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.RuntimeException: java.lang.RuntimeException: Unable
to instantiate org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:522)
at
org.apache.spark.sql.hive.client.HiveClientImpl.<init>(HiveClientImpl.scala:171)
... 47 more
Caused by: java.lang.RuntimeException: Unable to instantiate
org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1523)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:132)
at
org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.getProxy(RetryingMetaStoreClient.java:104)
at
org.apache.hadoop.hive.ql.metadata.Hive.createMetaStoreClient(Hive.java:3005)
at org.apache.hadoop.hive.ql.metadata.Hive.getMSC(Hive.java:3024)
at
org.apache.hadoop.hive.ql.session.SessionState.start(SessionState.java:503)
... 48 more
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521)
... 54 more
Caused by: javax.jdo.JDOFatalDataStoreException: Unable to open a test
connection to the given database. JDBC url =
jdbc:derby:;databaseName=metastore_db;create=true, username = APP. Terminating
connection pool (set lazyInit to true if you expect to start your database
after your app). Original Exception: ------
java.sql.SQLException: Failed to start database 'metastore_db' with class
loader org.apache.spark.sql.hive.client.IsolatedClientLoader$$anon$1@2435f119,
see the next exception for details.
at
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at
org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
at org.apache.derby.impl.jdbc.Util.seeNextException(Unknown Source)
at org.apache.derby.impl.jdbc.EmbedConnection.bootDatabase(Unknown
Source)
at org.apache.derby.impl.jdbc.EmbedConnection.<init>(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.getNewEmbedConnection(Unknown
Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.InternalDriver.connect(Unknown Source)
at org.apache.derby.jdbc.AutoloadedDriver.connect(Unknown Source)
at java.sql.DriverManager.getConnection(DriverManager.java:664)
at java.sql.DriverManager.getConnection(DriverManager.java:208)
at com.jolbox.bonecp.BoneCP.obtainRawInternalConnection(BoneCP.java:361)
at com.jolbox.bonecp.BoneCP.<init>(BoneCP.java:416)
at
com.jolbox.bonecp.BoneCPDataSource.getConnection(BoneCPDataSource.java:120)
at
org.datanucleus.store.rdbms.ConnectionFactoryImpl$ManagedConnectionImpl.getConnection(ConnectionFactoryImpl.java:501)
at
org.datanucleus.store.rdbms.RDBMSStoreManager.<init>(RDBMSStoreManager.java:298)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at
sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
at
sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
at java.lang.reflect.Constructor.newInstance(Constructor.java:423)
at
org.datanucleus.plugin.NonManagedPluginRegistry.createExecutableExtension(NonManagedPluginRegistry.java:631)
at
org.datanucleus.plugin.PluginManager.createExecutableExtension(PluginManager.java:301)
at
org.datanucleus.NucleusContext.createStoreManagerForProperties(NucleusContext.java:1187)
at org.datanucleus.NucleusContext.initialise(NucleusContext.java:356)
at org.datanucleus.api.jdo.JDOPersiste
1: createDataFrame(data.frame(dummy = 1:i)) at
/opt/spark-2.0.0-bin-hadoop2.6/R/lib/SparkR/tests/testthat/test_context.R:69
2: dispatchFunc("createDataFrame(data, schema = NULL, samplingRatio =
1.0)", x, ...)
3: f(x, ...)
4: callJStatic("org.apache.spark.sql.api.r.SQLUtils", "createDF", srdd,
schema$jobj,
sparkSession)
5: invokeJava(isStatic = TRUE, className, methodName, ...)
6: stop(readString(conn))
```
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