Github user wangmiao1981 commented on the issue:
https://github.com/apache/spark/pull/15421
@falaki I patched your fix to a clean build. I still see the following
error:
> df <- data.frame(Date = as.Date(c(rep("2016-01-10", 10), "NA", "NA")), id
= 1:12)
>
> dim(createDataFrame(df))
16/10/11 11:51:00 ERROR Executor: Exception in task 0.0 in stage 1.0 (TID 1)
java.lang.NegativeArraySizeException
at org.apache.spark.api.r.SerDe$.readStringBytes(SerDe.scala:110)
at org.apache.spark.api.r.SerDe$.readString(SerDe.scala:119)
at org.apache.spark.api.r.SerDe$.readDate(SerDe.scala:128)
at org.apache.spark.api.r.SerDe$.readTypedObject(SerDe.scala:77)
at org.apache.spark.api.r.SerDe$.readObject(SerDe.scala:61)
at
org.apache.spark.sql.api.r.SQLUtils$$anonfun$bytesToRow$1.apply(SQLUtils.scala:161)
at
org.apache.spark.sql.api.r.SQLUtils$$anonfun$bytesToRow$1.apply(SQLUtils.scala:160)
at
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:234)
at scala.collection.immutable.Range.foreach(Range.scala:160)
at scala.collection.TraversableLike$class.map(TraversableLike.scala:234)
at scala.collection.AbstractTraversable.map(Traversable.scala:104)
at org.apache.spark.sql.api.r.SQLUtils$.bytesToRow(SQLUtils.scala:160)
at
org.apache.spark.sql.api.r.SQLUtils$$anonfun$5.apply(SQLUtils.scala:138)
at
org.apache.spark.sql.api.r.SQLUtils$$anonfun$5.apply(SQLUtils.scala:138)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at scala.collection.Iterator$$anon$11.next(Iterator.scala:409)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.agg_doAggregateWithoutKey$(Unknown
Source)
at
org.apache.spark.sql.catalyst.expressions.GeneratedClass$GeneratedIterator.processNext(Unknown
Source)
at
org.apache.spark.sql.execution.BufferedRowIterator.hasNext(BufferedRowIterator.java:43)
at
org.apache.spark.sql.execution.WholeStageCodegenExec$$anonfun$8$$anon$1.hasNext(WholeStageCodegenExec.scala:372)
at scala.collection.Iterator$$anon$11.hasNext(Iterator.scala:408)
at
org.apache.spark.shuffle.sort.BypassMergeSortShuffleWriter.write(BypassMergeSortShuffleWriter.java:126)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:96)
at
org.apache.spark.scheduler.ShuffleMapTask.runTask(ShuffleMapTask.scala:53)
at org.apache.spark.scheduler.Task.run(Task.scala:99)
at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:282)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at java.lang.Thread.run(Thread.java:745)
I am still debugging. It seems that source on R side has some issue.
---
If your project is set up for it, you can reply to this email and have your
reply appear on GitHub as well. If your project does not have this feature
enabled and wishes so, or if the feature is enabled but not working, please
contact infrastructure at [email protected] or file a JIRA ticket
with INFRA.
---
---------------------------------------------------------------------
To unsubscribe, e-mail: [email protected]
For additional commands, e-mail: [email protected]
