Github user jkbradley commented on the issue:

    https://github.com/apache/spark/pull/16441
  
    Thanks for the PR; I do want to get this fixed.  However, I don't think 
this is the right way to make predictions of probabilities for GBTs.  I believe 
it should depend on the loss used.  E.g., check out page 8 of Friedman (1999) 
"Greedy Function Approximation? A Gradient Boosting Machine"


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