H all,
I went into sage's virtual environment, and then I run
(sage -sh)$ sage -i cgal-3.5.spkg
in order to install cgal. But the process ended in error. Below is the output
in the log file. I do not known what went wrong.
Best Regards,
Juan
cgal-3.5
====================================================
Extracting package /home/juan/Downloads/software/cgal-3.5.spkg
-rw-rw-r-- 1 juan juan 12141845 Feb 8 17:57
/home/juan/Downloads/software/cgal-3.5.spkg
Finished extraction
****************************************************
Host system:
Linux mostro 3.8.0-35-generic #52~precise1-Ubuntu SMP Thu Jan 30 17:24:40 UTC
2014 x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.3/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../src/configure
--prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-local-prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-gmp=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-mpfr=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-mpc=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-system-zlib --disable-multilib --disable-nls
Thread model: posix
gcc version 4.7.3 (GCC)
****************************************************
Starting build...
Running build_cgal...
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/gcc
-- Check for working C compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/gcc
-- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
-- Check for working CXX compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
-- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- CGAL_MAJOR_VERSION=3
-- CGAL_MINOR_VERSION=5
-- CGAL_BUILD_VERSION=
-- CGAL_SONAME_VERSION=4
-- CGAL_SOVERSION =4.0.0
-- CGAL_REFERENCE_CACHE_DIR=
-- Building shared libraries
-- Targetting Unix Makefiles
-- Using
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
compiler.
-- USING CMake version: 2.8.7
-- System: Linux
-- USING GCC_VERSION = '4.7.3'
-- Using gcc version 4 or later. Adding -frounding-math
-- Build type: Release
-- USING CXXFLAGS = ' -frounding-math -O3 -DNDEBUG'
-- USING LDFLAGS = ' '
-- GMPXX include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMPXX libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libgmpxx.so
-- Found MPFR:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMP include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMP libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libgmp.so
-- GMP definitions:
-- USING GMP_VERSION = '5.0.2'
-- MPFR include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- MPFR libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libmpfr.so
-- MPFR definitions:
-- USING MPFR_VERSION = '3.1.2'
CMake Warning (dev) at cmake/modules/FindBoost.cmake:257 (SET):
Cannot set "_boost_COMPILER_VERSION": current scope has no parent.
Call Stack (most recent call first):
cmake/modules/FindBoost.cmake:593 (_Boost_COMPILER_DUMPVERSION)
cmake/modules/CGAL_SetupBoost.cmake:12 (find_package)
cmake/modules/CGAL_SetupDependencies.cmake:17 (include)
CMakeLists.txt:220 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Boost version: 1.52.0
-- Found the following Boost libraries:
-- thread
-- Boost include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- Boost libraries: /usr/lib/libboost_thread-mt.so
-- Boost definitions:
-- USING BOOST_VERSION = '1.52.0'
-- Performing Test CGAL_CFG_DENORMALS_COMPILE_BUG - Success
-- Performing Test CGAL_CFG_FPU_ROUNDING_MODE_UNWINDING_VC_BUG - Success
-- Performing Test CGAL_CFG_IEEE_754_BUG - Success
-- Performing Test CGAL_CFG_ISTREAM_INT_BUG - Success
-- Performing Test CGAL_CFG_LONGNAME_BUG - Success
-- Performing Test CGAL_CFG_MATCHING_BUG_5 - Success
-- Performing Test CGAL_CFG_MATCHING_BUG_6 - Success
-- Performing Test CGAL_CFG_NESTED_CLASS_FRIEND_DECLARATION_BUG - Success
-- Performing Test CGAL_CFG_NET2003_MATCHING_BUG - Success
-- Performing Test CGAL_CFG_NO_CPP0X_ARRAY - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_DECLTYPE - Failed
-- Performing Test
CGAL_CFG_NO_CPP0X_DEFAULT_TEMPLATE_ARGUMENTS_FOR_FUNCTION_TEMPLATES - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_DELEGATING_CONSTRUCTORS - Success
-- Performing Test CGAL_CFG_NO_CPP0X_DELETED_AND_DEFAULT_FUNCTIONS - Success
-- Performing Test CGAL_CFG_NO_CPP0X_ISFINITE - Success
-- Performing Test CGAL_CFG_NO_CPP0X_LONG_LONG - Success
-- Performing Test CGAL_CFG_NO_CPP0X_RVALUE_REFERENCE - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_TUPLE - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_VARIADIC_TEMPLATES - Failed
-- Performing Test CGAL_CFG_NO_LIMITS - Success
-- Performing Test CGAL_CFG_NO_NEXTAFTER - Success
-- Performing Test CGAL_CFG_NO_STATEMENT_EXPRESSIONS - Success
-- Performing Test CGAL_CFG_NO_STL - Success
-- Performing Test CGAL_CFG_NO_TMPL_IN_TMPL_PARAM - Success
-- Performing Test CGAL_CFG_NO_TR1_ARRAY - Success
-- Performing Test CGAL_CFG_NO_TR1_TUPLE - Success
-- Performing Test CGAL_CFG_NUMERIC_LIMITS_BUG - Success
-- Performing Test CGAL_CFG_OUTOFLINE_MEMBER_DEFINITION_BUG - Success
-- Performing Test CGAL_CFG_TYPENAME_BEFORE_DEFAULT_ARGUMENT_BUG - Success
-- Performing Test CGAL_CFG_USING_BASE_MEMBER_BUG_2 - Success
--
CMAKE_INSTALL_PREFIX=/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local
CMake Warning (dev) at
/usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:85 (INCLUDE):
File /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake
includes
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/cmake/modules/FindPackageMessage.cmake
(found via CMAKE_MODULE_PATH) which shadows
/usr/share/cmake-2.8/Modules/FindPackageMessage.cmake. This may cause
errors later on .
Policy CMP0017 is not set: Prefer files from the CMake module directory
when including from there. Run "cmake --help-policy CMP0017" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindZLIB.cmake:84 (INCLUDE)
src/CGALimageIO/CMakeLists.txt:16 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found ZLIB:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libz.so
(found version "1.2.8")
-- Could NOT find OpenGL (missing: OPENGL_gl_LIBRARY)
-- CGAL_ImageIO needs OpenGL, cannot be configured.
-- CGAL_Qt3 needs Qt3, cannot be configured.
-- CGAL_Qt4 needs Qt4, cannot be configured.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_MODULE_INCLUDE_PATH
CMAKE_MODULE_LIBRARY_PATH
CMAKE_MODULE_PREFIX_PATH
-- Build files have been written to:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src
Scanning dependencies of target CGAL
[ 33%] Building CXX object src/CGAL/CMakeFiles/CGAL.dir/all_files.o
Linking CXX shared library ../../lib/libCGAL.so
[ 33%] Built target CGAL
Scanning dependencies of target CGAL_Core
[ 66%] Building CXX object src/CGALCore/CMakeFiles/CGAL_Core.dir/all_files.o
Linking CXX shared library ../../lib/libCGAL_Core.so
[ 66%] Built target CGAL_Core
Scanning dependencies of target CGAL_PDB
[100%] Building CXX object src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all_files.o
In file included from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Cartesian_base.h:60:0,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Simple_cartesian.h:27,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:27,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/PDB/Point.h:26,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/PDB/Atom.h:24,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/Atom.cpp:21,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/all_files.cpp:20:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:
In instantiation of
'CGAL::Aff_transformationC3<R_>::Aff_transformationC3(const FT&, const FT&,
const FT&, const FT&, const FT&, const FT&, const FT&, const FT&, const FT&,
const FT&, const FT&, const FT&, const FT&) [with R_ =
CGAL::Filtered_kernel<CGAL::Simple_cartesian<double> >;
CGAL::Aff_transformationC3<R_>::FT = double]':
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Aff_transformation_3.h:68:45:
required from 'CGAL::Aff_transformation_3<R_>::Aff_transformation_3(const
RT&, const RT&, const RT&, const RT&, const RT&, const RT&, const RT&, const
RT&, const RT&, const RT&, const RT&, const RT&, const RT&) [with R_ =
CGAL::Filtered_kernel<CGAL::Simple_cartesian<double> >;
CGAL::Aff_transformation_3<R_>::RT = double]'
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/Quaternion.cpp:103:49:
required from here
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
error: 'initialize_with' was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation
[-fpermissive]
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
note: declarations in dependent base
'CGAL::Handle_for_virtual<CGAL::Aff_transformation_rep_baseC3<CGAL::Filtered_kernel<CGAL::Simple_cartesian<double>
> > >' are not found by unqualified lookup
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
note: use 'this->initialize_with' instead
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
error: 'initialize_with' was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation
[-fpermissive]
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
note: declarations in dependent base
'CGAL::Handle_for_virtual<CGAL::Aff_transformation_rep_baseC3<CGAL::Filtered_kernel<CGAL::Simple_cartesian<double>
> > >' are not found by unqualified lookup
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
note: use 'this->initialize_with' instead
make[2]: *** [src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all_files.o] Error 1
make[1]: *** [src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all] Error 2
make: *** [all] Error 2
Error building cgal.
real 0m23.042s
user 0m14.000s
sys 0m1.404s
************************************************************************
Error installing package cgal-3.5
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/logs/pkgs/cgal-3.5.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5'
&&
'/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/sage'
--sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
cgal-3.5
====================================================
Extracting package /home/juan/Downloads/software/cgal-3.5.spkg
-rw-rw-r-- 1 juan juan 12141845 Feb 8 17:57
/home/juan/Downloads/software/cgal-3.5.spkg
Finished extraction
****************************************************
Host system:
Linux mostro 3.8.0-35-generic #52~precise1-Ubuntu SMP Thu Jan 30 17:24:40 UTC
2014 x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.3/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../src/configure
--prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-local-prefix=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-gmp=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-mpfr=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-mpc=/home/buildbot/build/sage/snapperkob/snapperkob_binary/build/sage-5.12/local
--with-system-zlib --disable-multilib --disable-nls
Thread model: posix
gcc version 4.7.3 (GCC)
****************************************************
Starting build...
Running build_cgal...
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/gcc
-- Check for working C compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/gcc
-- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
-- Check for working CXX compiler:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
-- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- CGAL_MAJOR_VERSION=3
-- CGAL_MINOR_VERSION=5
-- CGAL_BUILD_VERSION=
-- CGAL_SONAME_VERSION=4
-- CGAL_SOVERSION =4.0.0
-- CGAL_REFERENCE_CACHE_DIR=
-- Building shared libraries
-- Targetting Unix Makefiles
-- Using
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/bin/g++
compiler.
-- USING CMake version: 2.8.7
-- System: Linux
-- USING GCC_VERSION = '4.7.3'
-- Using gcc version 4 or later. Adding -frounding-math
-- Build type: Release
-- USING CXXFLAGS = ' -frounding-math -O3 -DNDEBUG'
-- USING LDFLAGS = ' '
-- GMPXX include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMPXX libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libgmpxx.so
-- Found MPFR:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMP include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- GMP libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libgmp.so
-- GMP definitions:
-- USING GMP_VERSION = '5.0.2'
-- MPFR include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- MPFR libraries:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libmpfr.so
-- MPFR definitions:
-- USING MPFR_VERSION = '3.1.2'
CMake Warning (dev) at cmake/modules/FindBoost.cmake:257 (SET):
Cannot set "_boost_COMPILER_VERSION": current scope has no parent.
Call Stack (most recent call first):
cmake/modules/FindBoost.cmake:593 (_Boost_COMPILER_DUMPVERSION)
cmake/modules/CGAL_SetupBoost.cmake:12 (find_package)
cmake/modules/CGAL_SetupDependencies.cmake:17 (include)
CMakeLists.txt:220 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Boost version: 1.52.0
-- Found the following Boost libraries:
-- thread
-- Boost include:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/include
-- Boost libraries: /usr/lib/libboost_thread-mt.so
-- Boost definitions:
-- USING BOOST_VERSION = '1.52.0'
-- Performing Test CGAL_CFG_DENORMALS_COMPILE_BUG - Success
-- Performing Test CGAL_CFG_FPU_ROUNDING_MODE_UNWINDING_VC_BUG - Success
-- Performing Test CGAL_CFG_IEEE_754_BUG - Success
-- Performing Test CGAL_CFG_ISTREAM_INT_BUG - Success
-- Performing Test CGAL_CFG_LONGNAME_BUG - Success
-- Performing Test CGAL_CFG_MATCHING_BUG_5 - Success
-- Performing Test CGAL_CFG_MATCHING_BUG_6 - Success
-- Performing Test CGAL_CFG_NESTED_CLASS_FRIEND_DECLARATION_BUG - Success
-- Performing Test CGAL_CFG_NET2003_MATCHING_BUG - Success
-- Performing Test CGAL_CFG_NO_CPP0X_ARRAY - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_DECLTYPE - Failed
-- Performing Test
CGAL_CFG_NO_CPP0X_DEFAULT_TEMPLATE_ARGUMENTS_FOR_FUNCTION_TEMPLATES - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_DELEGATING_CONSTRUCTORS - Success
-- Performing Test CGAL_CFG_NO_CPP0X_DELETED_AND_DEFAULT_FUNCTIONS - Success
-- Performing Test CGAL_CFG_NO_CPP0X_ISFINITE - Success
-- Performing Test CGAL_CFG_NO_CPP0X_LONG_LONG - Success
-- Performing Test CGAL_CFG_NO_CPP0X_RVALUE_REFERENCE - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_TUPLE - Failed
-- Performing Test CGAL_CFG_NO_CPP0X_VARIADIC_TEMPLATES - Failed
-- Performing Test CGAL_CFG_NO_LIMITS - Success
-- Performing Test CGAL_CFG_NO_NEXTAFTER - Success
-- Performing Test CGAL_CFG_NO_STATEMENT_EXPRESSIONS - Success
-- Performing Test CGAL_CFG_NO_STL - Success
-- Performing Test CGAL_CFG_NO_TMPL_IN_TMPL_PARAM - Success
-- Performing Test CGAL_CFG_NO_TR1_ARRAY - Success
-- Performing Test CGAL_CFG_NO_TR1_TUPLE - Success
-- Performing Test CGAL_CFG_NUMERIC_LIMITS_BUG - Success
-- Performing Test CGAL_CFG_OUTOFLINE_MEMBER_DEFINITION_BUG - Success
-- Performing Test CGAL_CFG_TYPENAME_BEFORE_DEFAULT_ARGUMENT_BUG - Success
-- Performing Test CGAL_CFG_USING_BASE_MEMBER_BUG_2 - Success
--
CMAKE_INSTALL_PREFIX=/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local
CMake Warning (dev) at
/usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:85 (INCLUDE):
File /usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake
includes
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/cmake/modules/FindPackageMessage.cmake
(found via CMAKE_MODULE_PATH) which shadows
/usr/share/cmake-2.8/Modules/FindPackageMessage.cmake. This may cause
errors later on .
Policy CMP0017 is not set: Prefer files from the CMake module directory
when including from there. Run "cmake --help-policy CMP0017" for policy
details. Use the cmake_policy command to set the policy and suppress this
warning.
Call Stack (most recent call first):
/usr/share/cmake-2.8/Modules/FindZLIB.cmake:84 (INCLUDE)
src/CGALimageIO/CMakeLists.txt:16 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found ZLIB:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/local/lib/libz.so
(found version "1.2.8")
-- Could NOT find OpenGL (missing: OPENGL_gl_LIBRARY)
-- CGAL_ImageIO needs OpenGL, cannot be configured.
-- CGAL_Qt3 needs Qt3, cannot be configured.
-- CGAL_Qt4 needs Qt4, cannot be configured.
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_MODULE_INCLUDE_PATH
CMAKE_MODULE_LIBRARY_PATH
CMAKE_MODULE_PREFIX_PATH
-- Build files have been written to:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src
Scanning dependencies of target CGAL
[ 33%] Building CXX object src/CGAL/CMakeFiles/CGAL.dir/all_files.o
Linking CXX shared library ../../lib/libCGAL.so
[ 33%] Built target CGAL
Scanning dependencies of target CGAL_Core
[ 66%] Building CXX object src/CGALCore/CMakeFiles/CGAL_Core.dir/all_files.o
Linking CXX shared library ../../lib/libCGAL_Core.so
[ 66%] Built target CGAL_Core
Scanning dependencies of target CGAL_PDB
[100%] Building CXX object src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all_files.o
In file included from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Cartesian_base.h:60:0,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Simple_cartesian.h:27,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:27,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/PDB/Point.h:26,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/PDB/Atom.h:24,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/Atom.cpp:21,
from
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/all_files.cpp:20:
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:
In instantiation of
'CGAL::Aff_transformationC3<R_>::Aff_transformationC3(const FT&, const FT&,
const FT&, const FT&, const FT&, const FT&, const FT&, const FT&, const FT&,
const FT&, const FT&, const FT&, const FT&) [with R_ =
CGAL::Filtered_kernel<CGAL::Simple_cartesian<double> >;
CGAL::Aff_transformationC3<R_>::FT = double]':
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Aff_transformation_3.h:68:45:
required from 'CGAL::Aff_transformation_3<R_>::Aff_transformation_3(const
RT&, const RT&, const RT&, const RT&, const RT&, const RT&, const RT&, const
RT&, const RT&, const RT&, const RT&, const RT&, const RT&) [with R_ =
CGAL::Filtered_kernel<CGAL::Simple_cartesian<double> >;
CGAL::Aff_transformation_3<R_>::RT = double]'
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/src/CGALPDB/Quaternion.cpp:103:49:
required from here
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
error: 'initialize_with' was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation
[-fpermissive]
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
note: declarations in dependent base
'CGAL::Handle_for_virtual<CGAL::Aff_transformation_rep_baseC3<CGAL::Filtered_kernel<CGAL::Simple_cartesian<double>
> > >' are not found by unqualified lookup
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:116:7:
note: use 'this->initialize_with' instead
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
error: 'initialize_with' was not declared in this scope, and no declarations
were found by argument-dependent lookup at the point of instantiation
[-fpermissive]
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
note: declarations in dependent base
'CGAL::Handle_for_virtual<CGAL::Aff_transformation_rep_baseC3<CGAL::Filtered_kernel<CGAL::Simple_cartesian<double>
> > >' are not found by unqualified lookup
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5/src/include/CGAL/Cartesian/Aff_transformation_3.h:120:7:
note: use 'this->initialize_with' instead
make[2]: *** [src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all_files.o] Error 1
make[1]: *** [src/CGALPDB/CMakeFiles/CGAL_PDB.dir/all] Error 2
make: *** [all] Error 2
Error building cgal.
real 0m17.099s
user 0m13.800s
sys 0m1.480s
************************************************************************
Error installing package cgal-3.5
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/logs/pkgs/cgal-3.5.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5
and type 'make' or whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd
'/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/spkg/build/cgal-3.5'
&&
'/home/juan/Downloads/software/sage-5.12-linux-64bit-ubuntu_12.04.3_lts-x86_64-Linux/sage'
--sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
--
You received this message because you are subscribed to the Google Groups
"sage-devel" group.
To unsubscribe from this group and stop receiving emails from it, send an email
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/sage-devel.
For more options, visit https://groups.google.com/groups/opt_out.
