A small handful of modules takes the majority of the doctest walltime, see 
e.g. this lopsided distribution:

<http://boxen.math.washington.edu/home/vbraun/t/doctest.png>
I'm proposing to 

* turn the existing sage -t --warn-long parameter into a warning (instead 
of an error)

* enable it by default with a limit of 60s on a modern computer, adjusted 
for slowness of the computer running the tests.

This is implemented in http://trac.sagemath.org/ticket/16609. Please review.

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