I did succeed in building the debian packages rubiks, sagenb, singular
and lcalc from debian-science. After that the pruner gives

elliptic_curves will not come from debian!
libgap will not come from debian!
flintqs will not come from debian!
polytopes_db will not come from debian!
eclib will not come from debian!
lcalc will not come from debian!
conway_polynomials will not come from debian!
polybori will not come from debian!
cddlib will not come from debian!
singular will not come from debian!
ratpoints will not come from debian!
jmol will not come from debian!
86 system packages will be used

which is not exactly what you get... The lcalc and singular detections
is especially strange since I just installed your debian packages.

Vincent

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