For me, the number 1 thing that our Trac server does better than GitHub
(again, I don't know about GitLab) is that the "branch" field is
mutable: an issue is just a pull request without a branch and I can
change the branch on a pull request to add a reviewer patch (sometimes
it's easier to add a patch myself instead of explaining to the author
what he should do).
And I agree that custom fields are also very useful: I always find using
GitHub labels quite messy. And things like "dependencies" simply cannot
be handled using labels.
Jeroen.
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