Hi Dima and John, I got the libstd++-static installed. I did not use screen this time. I am not sure how to make "check ...static libraries" to yes. The gcc, g++ and gfortran are all version 7.3.1 20180303 (Red Hat 7.3.1-5).
I am still getting the error for r. I am attaching the fresh log again just in case. Also I was thinking, the latest version of R available is r.3.5.1 and sage is trying to install r.3.4.4. Would upgrading it to r.3.5.1 resolve this mysterious issue? Thanks so much for your insights and help! Sincerely, Nagesh On Mon, Sep 3, 2018 at 5:49 PM Nagesh Adluru <nagesh.adl...@gmail.com> wrote: > 1) I realized recently that libstd++-static is missing. I will try to get > those and also try to make "check....static libraries" to yes for gfortran. > 2) I will try without screen just to check Dima's hypothesis. > 3) Thanks for sharing your input about paperconf, John! > > I will report back once I try these. > Thanks so much everyone! > Best, > Nagesh > > On Mon, Sep 3, 2018 at 5:17 PM John H Palmieri <jhpalmier...@gmail.com> > wrote: > >> On my OS X machine, I do not have paperconf, and R builds just fine. I >> wonder if screen is getting in the way somehow. Can you try without using >> it? >> >> (According to the log file, gfortran seems to be there. There is no >> working ObjC++ compiler, but I don't think that should be an issue, right?) >> >> >> >> On Monday, September 3, 2018 at 2:33:22 PM UTC-7, Dima Pasechnik wrote: >>> >>> you do have gfortran installed, right? >>> (usually R is one of the last packages to be built, but perhaps you >>> overlooked some errors) >>> >>> The R install log after paperconf would go as follows: >>> >>> ... >>> checking for lpr... lpr >>> checking for paperconf... /usr/bin/paperconf >>> checking whether we are using the GNU Fortran compiler... yes >>> checking whether gfortran accepts -g... yes >>> checking if libtool supports shared libraries... yes >>> checking whether to build shared libraries... yes >>> checking whether to build static libraries... no >>> ... >>> >>> and so I suspect that it misreports a fortran error... >>> >>> >>> >>> On Mon, Sep 3, 2018 at 11:52 PM Nagesh Adluru <nagesh...@gmail.com> >>> wrote: >>> > >>> > It is bash and >>> > the output of echo $SHELL is /bin/bash >>> > >>> > >>> > >>> > On Mon, Sep 3, 2018 at 3:44 PM Dima Pasechnik <dim...@gmail.com> >>> wrote: >>> >> >>> >> looks puzzling. >>> >> What is your default shell? >>> >> If it is not bash, then there might be strange problems like this. >>> What is the output of >>> >> >>> >> echo $SHELL >>> >> >>> >> >>> >> >>> >> On Mon, 3 Sep 2018, 19:48 Nagesh Adluru, <nagesh...@gmail.com> >>> wrote: >>> >>> >>> >>> Hi Dima, >>> >>> >>> >>> I am also getting the output letter just like in your case. It is >>> not crashing. So what would you think is the problem? >>> >>> >>> >>> Also thanks for clarifying about screen! >>> >>> >>> >>> Thanks so much. >>> >>> Nagesh >>> >>> >>> >>> On Mon, Sep 3, 2018 at 5:03 AM Dima Pasechnik <dim...@gmail.com> >>> wrote: >>> >>>> >>> >>>> On Sun, Sep 2, 2018 at 11:20 PM Nagesh Adluru <nagesh...@gmail.com> >>> wrote: >>> >>>> > >>> >>>> > Hi David, >>> >>>> > >>> >>>> > Thanks for sharing that insight. I did install the anaconda in >>> between for a different purpose which explains the new problem with libcurl >>> that I did not have before the libpaper issue. Based on your advice I >>> removed anaconda from the path and I did a full make distclean and >>> reinstall and now the libcurl is gone but it still errors after paperconf >>> message (log attached) even though we have libpaper installed (screenshot >>> attached). >>> >>>> > Please let me know what should I try next since libcurl seems no >>> longer to be a problem and libpaper is installed! >>> >>>> > >>> >>>> what is the output of 'paperconf' ? >>> >>>> Could you try running paperconf at shell prompt, to see if it >>> outputs >>> >>>> anything meaningful, e.g. for me it >>> >>>> outputs 'letter'. It looks as if it either crashes, or outputs >>> >>>> something R is not happy about... >>> >>>> >>> >>>> $ paperconf >>> >>>> letter >>> >>>> >>> >>>> >>> >>>> > Thank you all so much for the help! >>> >>>> > Sincerely, >>> >>>> > Nagesh >>> >>>> > >>> >>>> > On Sun, Sep 2, 2018 at 10:06 AM David Einstein <dei...@gmail.com> >>> wrote: >>> >>>> >> >>> >>>> >> I don't know about centos, but on OSX this situation occurs when >>> anaconda is installed, and the anaconda directories occur earlier in the >>> path than the system directories. Removing anaconda from the path before >>> building sage fixes the problem. >>> >>>> >> >>> >>>> >> On Sunday, September 2, 2018 at 8:15:33 AM UTC-4, Nagesh Adluru >>> wrote: >>> >>>> >>> >>> >>>> >>> I had actually thought of that but the sys admin thought we had >>> the devel installed. I will pursue this line with more pressure now that I >>> have your suggestion as well. >>> >>>> >>> >>> >>>> >>> Thanks again so much for the prompt help! >>> >>>> >>> Best, >>> >>>> >>> Nagesh >>> >>>> >>> >>> >>>> >>> On Sun, Sep 2, 2018, 2:12 AM Dima Pasechnik <dim...@gmail.com> >>> wrote: >>> >>>> >>>> >>> >>>> >>>> >>> >>>> >>>> >>> >>>> >>>> On Sunday, September 2, 2018 at 1:27:46 AM UTC+3, Nagesh >>> Adluru wrote: >>> >>>> >>>>> >>> >>>> >>>>> Hi Dima, >>> >>>> >>>>> >>> >>>> >>>>> Between the delays from our IT admin and me trying to resolve >>> the issue by myself since in the original log there was no issue of >>> libcurl, I got delayed in getting back. >>> >>>> >>>> >>> >>>> >>>> >>> >>>> >>>> The log says: >>> >>>> >>>> >>> >>>> >>>> configure: error: libcurl >= 7.22.0 library and headers are >>> required >>> >>>> >>>> >>> >>>> >>>> You need libcurl-devel package, which includes headers. >>> >>>> >>>> >>> >>>> >>>> HTH >>> >>>> >>>> Dima >>> >>>> >>>> >>> >>>> >>>>> >>> >>>> >>>>> I am really sorry for the delay. I was however not able to >>> resolve this issue by myself. If you see the new log (attached) for >>> r-3.4.4.p0 you would see that it is not seeing the libcurl that we have. >>> Our yum info on libcurl says we have 7.26 (screenshot attached) but the R >>> configuration does not seem to find the necessary library headers for above >>> 7.22. >>> >>>> >>>>> >>> >>>> >>>>> Could you kindly look into this? Again I am really sorry for >>> the delay. >>> >>>> >>>>> Thank you so much. >>> >>>> >>>>> Nagesh >>> >>>> >>>>> >>> >>>> >>>>> On Mon, Aug 27, 2018 at 1:27 AM Dima Pasechnik < >>> dim...@gmail.com> wrote: >>> >>>> >>>>>> >>> >>>> >>>>>> if you still have the failed Sage install, all you need to >>> do after libpaper installation is to run make again. >>> >>>> >>>>>> >>> >>>> >>>>>> -- >>> >>>> >>>>>> You received this message because you are subscribed to the >>> Google Groups "sage-devel" group. >>> >>>> >>>>>> To unsubscribe from this group and stop receiving emails >>> from it, send an email to sage-devel+...@googlegroups.com. >>> >>>> >>>>>> To post to this group, send email to >>> sage-...@googlegroups.com. >>> >>>> >>>>>> Visit this group at >>> https://groups.google.com/group/sage-devel. >>> >>>> >>>>>> For more options, visit https://groups.google.com/d/optout. >>> >>>> >>>> >>> >>>> >>>> -- >>> >>>> >>>> You received this message because you are subscribed to the >>> Google Groups "sage-devel" group. >>> >>>> >>>> To unsubscribe from this group and stop receiving emails from >>> it, send an email to sage-devel+...@googlegroups.com. >>> >>>> >>>> To post to this group, send email to sage-...@googlegroups.com. >>> >>> >>>> >>>> Visit this group at https://groups.google.com/group/sage-devel. >>> >>> >>>> >>>> For more options, visit https://groups.google.com/d/optout. >>> >>>> >> >>> >>>> >> -- >>> >>>> >> You received this message because you are subscribed to the >>> Google Groups "sage-devel" group. >>> >>>> >> To unsubscribe from this group and stop receiving emails from >>> it, send an email to sage-devel+...@googlegroups.com. >>> >>>> >> To post to this group, send email to sage-...@googlegroups.com. >>> >>>> >> Visit this group at https://groups.google.com/group/sage-devel. >>> >>>> >> For more options, visit https://groups.google.com/d/optout. >>> >>>> > >>> >>>> > -- >>> >>>> > You received this message because you are subscribed to the >>> Google Groups "sage-devel" group. >>> >>>> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >>>> > To post to this group, send email to sage-...@googlegroups.com. >>> >>>> > Visit this group at https://groups.google.com/group/sage-devel. >>> >>>> > For more options, visit https://groups.google.com/d/optout. >>> >>>> >>> >>>> -- >>> >>>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> >>>> To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >>>> To post to this group, send email to sage-...@googlegroups.com. >>> >>>> Visit this group at https://groups.google.com/group/sage-devel. >>> >>>> For more options, visit https://groups.google.com/d/optout. >>> >>> >>> >>> -- >>> >>> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> >>> To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >>> To post to this group, send email to sage-...@googlegroups.com. >>> >>> Visit this group at https://groups.google.com/group/sage-devel. >>> >>> For more options, visit https://groups.google.com/d/optout. >>> >> >>> >> -- >>> >> You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> >> To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >> To post to this group, send email to sage-...@googlegroups.com. >>> >> Visit this group at https://groups.google.com/group/sage-devel. >>> >> For more options, visit https://groups.google.com/d/optout. >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> > To post to this group, send email to sage-...@googlegroups.com. >>> > Visit this group at https://groups.google.com/group/sage-devel. >>> > For more options, visit https://groups.google.com/d/optout. >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-devel" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-devel+unsubscr...@googlegroups.com. >> To post to this group, send email to sage-devel@googlegroups.com. >> Visit this group at https://groups.google.com/group/sage-devel. >> For more options, visit https://groups.google.com/d/optout. >> > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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Found local metadata for r-3.4.4.p0 Using cached file /home/nadluru/sage/upstream/R-3.4.4.tar.gz r-3.4.4.p0 ==================================================== Setting up build directory for r-3.4.4.p0 Finished extraction Applying patches from ../patches... Applying ../patches/autoconf_verb_dash.patch patching file configure Applying ../patches/cygwin_build_support.patch patching file configure patching file configure.ac patching file src/library/tools/R/install.R Applying ../patches/hardcoded_dirs.patch patching file src/scripts/Makefile.in patching file src/scripts/R.sh.in Applying ../patches/libcurl_https_support.patch patching file configure patching file m4/R.m4 Applying ../patches/link.patch patching file src/include/GraphicsBase.h Applying ../patches/link_all_shared_libs.patch patching file etc/Makeconf.in Applying ../patches/m4_macro_bug.patch patching file configure patching file m4/R.m4 Applying ../patches/parent_sig_handler.patch patching file src/library/parallel/src/fork.c Applying ../patches/rcmd_exec.patch patching file src/scripts/Rcmd.in **************************************************** Host system: Linux bender.dom.wisc.edu 3.10.0-862.11.6.el7.x86_64 #1 SMP Tue Aug 14 21:49:04 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-7/root/usr/libexec/gcc/x86_64-redhat-linux/7/lto-wrapper Target: x86_64-redhat-linux Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-7/root/usr --mandir=/opt/rh/devtoolset-7/root/usr/share/man --infodir=/opt/rh/devtoolset-7/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --enable-plugin --with-linker-hash-style=gnu --enable-initfini-array --with-default-libstdcxx-abi=gcc4-compatible --with-isl=/builddir/build/BUILD/gcc-7.3.1-20180303/obj-x86_64-redhat-linux/isl-install --enable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 7.3.1 20180303 (Red Hat 7.3.1-5) (GCC) **************************************************** No record that 'r' was ever installed; 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declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... 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(cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_callback_sigcleanup exists and is declared... no checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... 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(cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... 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-L/home/nadluru/sage/local/lib/../lib64 -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7/../../.. -lgcc_s checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ accepts -M for generating dependencies... yes checking for g++ option to support OpenMP... -fopenmp checking whether we can compute ObjC Make dependencies... no checking whether C runtime needs -D__NO_MATH_INLINES... no checking for xmkmf... no checking whether g++ supports C++98 features by default... no checking whether g++ supports C++98 features with -std=gnu++98... yes checking whether g++ supports C++11 features by default... no checking whether g++ supports C++11 features with -std=gnu++11... yes checking whether g++ supports C++14 features by default... yes checking whether g++ supports C++17 features by default... no checking whether g++ supports C++17 features with -std=gnu++17... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists 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declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -L/home/nadluru/sage/local/lib -lopenblas ... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... disabled using X11 ... no checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... /usr/lib64/tclConfig.sh checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... /usr/lib64/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes checking if PCRE version >= 8.32... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/bin/curl-config checking libcurl version ... 7.29.0 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.22.0... yes checking if jpeglib version >= 6b... no checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking tiffio.h usability... yes checking tiffio.h presence... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for lpr... lpr checking for paperconf... /usr/bin/paperconf Error configuring R. real 1m25.884s user 0m39.381s sys 0m33.091s ************************************************************************ Error installing package r-3.4.4.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /home/nadluru/sage/logs/pkgs/r-3.4.4.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/nadluru/sage/local/var/tmp/sage/build/r-3.4.4.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/nadluru/sage/local/var/tmp/sage/build/r-3.4.4.p0' && '/home/nadluru/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
