Wow! That did the trick!! Thanks for taking those guesses :) Best, Nagesh
On Tue, Sep 4, 2018 at 3:25 PM John H Palmieri <jhpalmier...@gmail.com> wrote: > I am not an expert in configure scripts, but it looks to me as though the > next thing in R's configure script deals with java. Maybe java is broken on > your system badly enough that it halts the configure script? You could try > this: > > - copy the flies java and javac from SAGE_ROOT/build/pkgs/r/patches/ to > SAGE_ROOT/local/bin. This installs intentionally "broken" versions of java > and javac, to prevent any system versions from interfering with R's > installation process. > - run 'make r' (which will try to install R). > - then delete the files java and javac from SAGE_ROOT/local/bin. > > I'm really just taking guesses, though. > > John > > > On Tuesday, September 4, 2018 at 12:40:38 PM UTC-7, Nagesh Adluru wrote: >> >> Hi Dima and John, >> >> I got the libstd++-static installed. I did not use screen this time. I am >> not sure how to make "check ...static libraries" to yes. The gcc, g++ and >> gfortran are all version 7.3.1 20180303 (Red Hat 7.3.1-5). >> >> I am still getting the error for r. I am attaching the fresh log again >> just in case. Also I was thinking, the latest version of R available is >> r.3.5.1 and sage is trying to install r.3.4.4. Would upgrading it to >> r.3.5.1 resolve this mysterious issue? >> >> Thanks so much for your insights and help! >> Sincerely, >> Nagesh >> On Mon, Sep 3, 2018 at 5:49 PM Nagesh Adluru <nagesh...@gmail.com> wrote: >> >>> 1) I realized recently that libstd++-static is missing. I will try to >>> get those and also try to make "check....static libraries" to yes for >>> gfortran. >>> 2) I will try without screen just to check Dima's hypothesis. >>> 3) Thanks for sharing your input about paperconf, John! >>> >>> I will report back once I try these. >>> Thanks so much everyone! >>> Best, >>> Nagesh >>> >>> On Mon, Sep 3, 2018 at 5:17 PM John H Palmieri <jhpalm...@gmail.com> >>> wrote: >>> >>>> On my OS X machine, I do not have paperconf, and R builds just fine. I >>>> wonder if screen is getting in the way somehow. Can you try without using >>>> it? >>>> >>>> (According to the log file, gfortran seems to be there. There is no >>>> working ObjC++ compiler, but I don't think that should be an issue, right?) >>>> >>>> >>>> >>>> On Monday, September 3, 2018 at 2:33:22 PM UTC-7, Dima Pasechnik wrote: >>>>> >>>>> you do have gfortran installed, right? >>>>> (usually R is one of the last packages to be built, but perhaps you >>>>> overlooked some errors) >>>>> >>>>> The R install log after paperconf would go as follows: >>>>> >>>>> ... >>>>> checking for lpr... lpr >>>>> checking for paperconf... /usr/bin/paperconf >>>>> checking whether we are using the GNU Fortran compiler... yes >>>>> checking whether gfortran accepts -g... yes >>>>> checking if libtool supports shared libraries... yes >>>>> checking whether to build shared libraries... yes >>>>> checking whether to build static libraries... no >>>>> ... >>>>> >>>>> and so I suspect that it misreports a fortran error... >>>>> >>>>> >>>>> >>>>> On Mon, Sep 3, 2018 at 11:52 PM Nagesh Adluru <nagesh...@gmail.com> >>>>> wrote: >>>>> > >>>>> > It is bash and >>>>> > the output of echo $SHELL is /bin/bash >>>>> > >>>>> > >>>>> > >>>>> > On Mon, Sep 3, 2018 at 3:44 PM Dima Pasechnik <dim...@gmail.com> >>>>> wrote: >>>>> >> >>>>> >> looks puzzling. >>>>> >> What is your default shell? >>>>> >> If it is not bash, then there might be strange problems like this. >>>>> What is the output of >>>>> >> >>>>> >> echo $SHELL >>>>> >> >>>>> >> >>>>> >> >>>>> >> On Mon, 3 Sep 2018, 19:48 Nagesh Adluru, <nagesh...@gmail.com> >>>>> wrote: >>>>> >>> >>>>> >>> Hi Dima, >>>>> >>> >>>>> >>> I am also getting the output letter just like in your case. It is >>>>> not crashing. So what would you think is the problem? >>>>> >>> >>>>> >>> Also thanks for clarifying about screen! >>>>> >>> >>>>> >>> Thanks so much. >>>>> >>> Nagesh >>>>> >>> >>>>> >>> On Mon, Sep 3, 2018 at 5:03 AM Dima Pasechnik <dim...@gmail.com> >>>>> wrote: >>>>> >>>> >>>>> >>>> On Sun, Sep 2, 2018 at 11:20 PM Nagesh Adluru < >>>>> nagesh...@gmail.com> wrote: >>>>> >>>> > >>>>> >>>> > Hi David, >>>>> >>>> > >>>>> >>>> > Thanks for sharing that insight. I did install the anaconda in >>>>> between for a different purpose which explains the new problem with >>>>> libcurl >>>>> that I did not have before the libpaper issue. Based on your advice I >>>>> removed anaconda from the path and I did a full make distclean and >>>>> reinstall and now the libcurl is gone but it still errors after paperconf >>>>> message (log attached) even though we have libpaper installed (screenshot >>>>> attached). >>>>> >>>> > Please let me know what should I try next since libcurl seems >>>>> no longer to be a problem and libpaper is installed! >>>>> >>>> > >>>>> >>>> what is the output of 'paperconf' ? >>>>> >>>> Could you try running paperconf at shell prompt, to see if it >>>>> outputs >>>>> >>>> anything meaningful, e.g. for me it >>>>> >>>> outputs 'letter'. It looks as if it either crashes, or outputs >>>>> >>>> something R is not happy about... >>>>> >>>> >>>>> >>>> $ paperconf >>>>> >>>> letter >>>>> >>>> >>>>> >>>> >>>>> >>>> > Thank you all so much for the help! >>>>> >>>> > Sincerely, >>>>> >>>> > Nagesh >>>>> >>>> > >>>>> >>>> > On Sun, Sep 2, 2018 at 10:06 AM David Einstein < >>>>> dei...@gmail.com> wrote: >>>>> >>>> >> >>>>> >>>> >> I don't know about centos, but on OSX this situation occurs >>>>> when anaconda is installed, and the anaconda directories occur earlier in >>>>> the path than the system directories. Removing anaconda from the path >>>>> before building sage fixes the problem. >>>>> >>>> >> >>>>> >>>> >> On Sunday, September 2, 2018 at 8:15:33 AM UTC-4, Nagesh >>>>> Adluru wrote: >>>>> >>>> >>> >>>>> >>>> >>> I had actually thought of that but the sys admin thought we >>>>> had the devel installed. I will pursue this line with more pressure now >>>>> that I have your suggestion as well. >>>>> >>>> >>> >>>>> >>>> >>> Thanks again so much for the prompt help! >>>>> >>>> >>> Best, >>>>> >>>> >>> Nagesh >>>>> >>>> >>> >>>>> >>>> >>> On Sun, Sep 2, 2018, 2:12 AM Dima Pasechnik <dim...@gmail.com> >>>>> wrote: >>>>> >>>> >>>> >>>>> >>>> >>>> >>>>> >>>> >>>> >>>>> >>>> >>>> On Sunday, September 2, 2018 at 1:27:46 AM UTC+3, Nagesh >>>>> Adluru wrote: >>>>> >>>> >>>>> >>>>> >>>> >>>>> Hi Dima, >>>>> >>>> >>>>> >>>>> >>>> >>>>> Between the delays from our IT admin and me trying to >>>>> resolve the issue by myself since in the original log there was no issue >>>>> of >>>>> libcurl, I got delayed in getting back. >>>>> >>>> >>>> >>>>> >>>> >>>> >>>>> >>>> >>>> The log says: >>>>> >>>> >>>> >>>>> >>>> >>>> configure: error: libcurl >= 7.22.0 library and headers are >>>>> required >>>>> >>>> >>>> >>>>> >>>> >>>> You need libcurl-devel package, which includes headers. >>>>> >>>> >>>> >>>>> >>>> >>>> HTH >>>>> >>>> >>>> Dima >>>>> >>>> >>>> >>>>> >>>> >>>>> >>>>> >>>> >>>>> I am really sorry for the delay. I was however not able to >>>>> resolve this issue by myself. If you see the new log (attached) for >>>>> r-3.4.4.p0 you would see that it is not seeing the libcurl that we have. >>>>> Our yum info on libcurl says we have 7.26 (screenshot attached) but the R >>>>> configuration does not seem to find the necessary library headers for >>>>> above >>>>> 7.22. >>>>> >>>> >>>>> >>>>> >>>> >>>>> Could you kindly look into this? Again I am really sorry >>>>> for the delay. >>>>> >>>> >>>>> Thank you so much. >>>>> >>>> >>>>> Nagesh >>>>> >>>> >>>>> >>>>> >>>> >>>>> On Mon, Aug 27, 2018 at 1:27 AM Dima Pasechnik < >>>>> dim...@gmail.com> wrote: >>>>> >>>> >>>>>> >>>>> >>>> >>>>>> if you still have the failed Sage install, all you need to >>>>> do after libpaper installation is to run make again. >>>>> >>>> >>>>>> >>>>> >>>> >>>>>> -- >>>>> >>>> >>>>>> You received this message because you are subscribed to >>>>> the Google Groups "sage-devel" group. >>>>> >>>> >>>>>> To unsubscribe from this group and stop receiving emails >>>>> from it, send an email to sage-devel+...@googlegroups.com. >>>>> >>>> >>>>>> To post to this group, send email to >>>>> sage-...@googlegroups.com. >>>>> >>>> >>>>>> Visit this group at >>>>> https://groups.google.com/group/sage-devel. >>>>> >>>> >>>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>>> >>>> >>>> >>>>> >>>> >>>> -- >>>>> >>>> >>>> You received this 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>>>> > >>>>> >>>> > -- >>>>> >>>> > You received this message because you are subscribed to the >>>>> Google Groups "sage-devel" group. >>>>> >>>> > To unsubscribe from this group and stop receiving emails from >>>>> it, send an email to sage-devel+...@googlegroups.com. >>>>> >>>> > To post to this group, send email to sage-...@googlegroups.com. >>>>> >>>>> >>>> > Visit this group at https://groups.google.com/group/sage-devel. >>>>> >>>>> >>>> > For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>>> >>>> -- >>>>> >>>> You received this message because you are subscribed to the >>>>> Google Groups "sage-devel" group. >>>>> >>>> To unsubscribe from this group and stop receiving emails from it, >>>>> send an email to sage-devel+...@googlegroups.com. >>>>> >>>> To post to this group, send email to sage-...@googlegroups.com. >>>>> >>>> Visit this group at https://groups.google.com/group/sage-devel. >>>>> >>>> For more options, visit https://groups.google.com/d/optout. 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