On Sun, 13 Oct 2019, 20:57 David Coudert, <david.coud...@inria.fr> wrote:
> > > Le 13 oct. 2019 à 20:24, Dima Pasechnik <dimp...@gmail.com> a écrit : > > On Sun, Oct 13, 2019 at 4:57 PM David Coudert <david.coud...@inria.fr> > wrote: > > > It’s working ! I can now complete compilation. > > Thanks both of you for the help. > > Now I have to remember to remove MacOSX10.14.sdk when it will no longer be > needed, but when… > > > > > hmm, so does this mean that you didn't do a full rebuild of Sage after > OS upgrade? > Cause you are on 10.15 now, no? > > > I had to reformat my hard drive, so I reinstalled / rebuilt everything > from scratch, including Sagemath. > I’m currently with Mojave 10.14.6. > However, I did an update Xcode 2-3 days ago (app store said I should > update Xcode…) but didn’t do full rebuild. Should I ? > well, this upgrade did break gfortran. I presume building gfortran from scratch does not need that Xcode hack by Isuru... > D. > > > > David. > > Le 13 oct. 2019 à 17:32, Isuru Fernando <isu...@gmail.com> a écrit : > > You have the same issue as > https://github.com/sagemath/binary-pkg/issues/19 > > Can you try downloading 10.14 SDK from > https://github.com/phracker/MacOSX-SDKs/releases/download/10.14-beta4/MacOSX10.14.sdk.tar.xz > extracting it inside > `/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk` > > Isuru > > On Sun, Oct 13, 2019 at 10:27 AM David Coudert <david.coud...@inria.fr> > wrote: > > > No, but MacOSX10.15.sdk > > confetti:lib dcoudert$ ll > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk > ls: > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk: > No such file or directory > confetti:lib dcoudert$ ll > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/ > total 0 > drwxr-xr-x 4 root wheel 128 12 sep 05:13 DriverKit19.0.sdk > drwxr-xr-x 8 root wheel 256 12 sep 05:13 MacOSX.sdk > lrwxr-xr-x 1 root wheel 10 8 oct 15:28 MacOSX10.15.sdk -> MacOSX.sdk > > > Le 13 oct. 2019 à 17:16, Isuru Fernando <isu...@gmail.com> a écrit : > > Hi, > > Do you have the folder > /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk > ? > > Isuru > > On Sun, Oct 13, 2019 at 10:14 AM David Coudert <david.coud...@inria.fr> > wrote: > > > here it is. > > confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran > -print-prog-name=ld > ld > confetti:lib dcoudert$ /Users/dcoudert/sage3/sage/local/bin/gfortran -v > Using built-in specs. > COLLECT_GCC=/Users/dcoudert/sage3/sage/local/bin/gfortran > > COLLECT_LTO_WRAPPER=/Users/dcoudert/sage3/sage/local/libexec/gcc/x86_64-apple-darwin18.6.0/7.4.0/lto-wrapper > Target: x86_64-apple-darwin18.6.0 > Configured with: ../src/configure > --prefix=/Users/dcoudert/sage3/sage/local > --with-local-prefix=/Users/dcoudert/sage3/sage/local > --with-gmp=/Users/dcoudert/sage3/sage/local > --with-mpfr=/Users/dcoudert/sage3/sage/local > --with-mpc=/Users/dcoudert/sage3/sage/local --with-system-zlib > --without-isl --disable-multilib --disable-nls --disable-libitm > --with-build-config=bootstrap-debug --without-isl --without-cloog > --with-sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk > --disable-bootstrap --enable-languages=fortran > Thread model: posix > gcc version 7.4.0 (GCC) > > > Le 13 oct. 2019 à 16:47, Isuru Fernando <isu...@gmail.com> a écrit : > > Hi, > > This is a problem with gfortran using an incorrect linker. > > Can you post the output of, > > /Users/dcoudert/sage3/sage/local/bin/gfortran -print-prog-name=ld > > /Users/dcoudert/sage3/sage/local/bin/gfortran -v > > Isuru > > > On Sun, Oct 13, 2019 at 8:21 AM David Coudert <david.coud...@inria.fr> > wrote: > > > confetti:lib dcoudert$ otool -L libfflas.dylib > libfflas.dylib: > /Users/dcoudert/sage3/sage/local/lib/libfflas.1.dylib (compatibility > version 2.0.0, current version 2.0.0) > /Users/dcoudert/sage3/sage/local/lib/libgivaro.9.dylib (compatibility > version 11.0.0, current version 11.1.0) > /Users/dcoudert/sage3/sage/local/lib/libgmp.23.dylib (compatibility > version 24.0.0, current version 24.3.0) > /Users/dcoudert/sage3/sage/local/lib/libgmpxx.8.dylib (compatibility > version 13.0.0, current version 13.3.0) > /Users/dcoudert/sage3/sage/local/lib/libopenblas_haswellp-r0.3.6.dylib > (compatibility version 0.0.0, current version 0.0.0) > /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version > 400.9.4) > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version > 1252.250.1) > > > Le 13 oct. 2019 à 15:19, Dima Pasechnik <dimp...@gmail.com> a écrit : > > oops sorry, your gfortran is ok. > how about fflas* package, it is probably broken... > > On Sun, 13 Oct 2019, 14:17 Dima Pasechnik, <dimp...@gmail.com> wrote: > > > are you building gfortran in Sage, or using a prebuilt one? > > it might be that its libgfortran got broken > > On Sun, 13 Oct 2019, 13:01 David Coudert, <david.coud...@inria.fr> wrote: > > > > > confetti:lib dcoudert$ pwd > > /Users/dcoudert/sage3/sage/local/lib > > confetti:lib dcoudert$ otool -L libgfortran.dylib > > libgfortran.dylib: > > /Users/dcoudert/sage3/sage/local/lib/libgfortran.4.dylib (compatibility > version 5.0.0, current version 5.0.0) > > /Users/dcoudert/sage3/sage/local/lib/libquadmath.0.dylib (compatibility > version 1.0.0, current version 1.0.0) > > /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version > 1252.250.1) > > /Users/dcoudert/sage3/sage/local/lib/libgcc_s.1.dylib (compatibility > version 1.0.0, current version 1.0.0) > > > > but I don't have the 2 others > > confetti:sage dcoudert$ ls -lR | grep ftpack | grep dylib > > confetti:sage dcoudert$ pwd > > > /Users/dcoudert/sage3/sage > > > > > > > Le dimanche 13 octobre 2019 13:48:55 UTC+2, Dima Pasechnik a écrit : > > > I gather that the error comes from one of -ldfftpack -lfftpack -lgfortran > being incorrectly linked/broken. > > please locate the relevant lib*.dylib files (in SAGE_LOCAL?) and run > "otool -L" on each of them > to see if they are OK. > > > On Sun, Oct 13, 2019 at 12:43 PM David Coudert <david....@inria.fr> wrote: > > > it's an incremental build from 9.0.beta0. > I upgraded my OS in July after a system crash. So I had to reinstall > everything from scratch. > > In case, I have Xcode Version 11.1 (11A1027). > > Le dimanche 13 octobre 2019 13:29:21 UTC+2, Dima Pasechnik a écrit : > > > Is this a build from scratch? > (after an OS upgrade, incremental builds may break) > > > On Sun, Oct 13, 2019 at 12:19 PM David Coudert <david....@inria.fr> wrote: > > > > > Le dimanche 13 octobre 2019 12:53:02 UTC+2, Dima Pasechnik a écrit : > > > We have already seen that puzzling > > ld: library not found for -lSystem > > error message. > > Is there a /usr/lib/libSystem.dylib present? > > > > Yes: > > > confetti:sage dcoudert$ ll /usr/lib/libSystem.dylib > > lrwxr-xr-x 1 root wheel 17 19 jul 08:15 /usr/lib/libSystem.dylib -> > libSystem.B.dylib > > > > > If yes, then I guess this means a broken dependency of scipy, more > specifically, a broken dylib, built > along the way. > or Xcode that needs to be reinstalled... > > Can you do > ./sage --python > > import numpy > > > without an error? > > > > yes too: > > confetti:sage dcoudert$ ./sage --python > > Python 3.7.3 (default, Oct 13 2019, 02:06:13) > > [Clang 11.0.0 (clang-1100.0.33.8)] on darwin > > Type "help", "copyright", "credits" or "license" for more information. > > import numpy > > > > > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/848357f8-1c79-481a-abb3-e87331775d8a%40googlegroups.com > . > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/752fcf51-af9a-4315-b62d-f15dab05f4ea%40googlegroups.com > . > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/0e66a999-c1d3-47e4-9ff6-2a929c4d820a%40googlegroups.com > . > > > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CAAWYfq3RJZ8%2Bp4gqHUbDH2bfYYrNUqrdssxANzg4Ltbefzt-DA%40mail.gmail.com > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/2070FE77-6360-4B60-ADBF-C0483413C43E%40inria.fr > . > > > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CA%2B01voMr95sDiUZVEdLi-aGkDxu0%3DNh5Ha%2B6VGKSMqb%2BRXBAEQ%40mail.gmail.com > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/F36C2728-EB9B-4278-9D3D-B6AB4EE1E49C%40inria.fr > . > > > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CA%2B01voPqaumXN8djLY5e-cz3HGCKRm2PNHf7yNdTuBQ8TBZ-ug%40mail.gmail.com > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/76D98730-1604-481C-867B-4451AFD07CA7%40inria.fr > . > > > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CA%2B01voOmPj__0NHNJ6g4pyM3ZpL9stVof2hA6pix%2BXphkccPdg%40mail.gmail.com > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/E6B4C375-6C40-4F17-B3BD-BED2EA6E3C0E%40inria.fr > . > > > -- > You received this message because you are subscribed to a topic in the > Google Groups "sage-devel" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/sage-devel/TsdmX1ozkq0/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/CAAWYfq2QQF5HbmdGDdiUimkFqM6A4HpAqpFaH%2BSyvoK8fn-YLw%40mail.gmail.com > . > > > ---- > David Coudert > Equipe-Projet COATI > Centre de Recherche INRIA Sophia Antipolis - Méditerranée > Université Côte d’Azur, Inria, CNRS, I3S, France > http://www-sop.inria.fr/members/David.Coudert > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/2E026728-0D1D-4C26-9CE2-5AB049269B55%40inria.fr > <https://groups.google.com/d/msgid/sage-devel/2E026728-0D1D-4C26-9CE2-5AB049269B55%40inria.fr?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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