On Tue, Sep 10, 2019 at 2:16 PM Mariel Supina <mariel_sup...@berkeley.edu> wrote: > > Hi, > > On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik wrote: >> >> On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina >> <mariel...@berkeley.edu> wrote: >> > >> > On Debian stretch, I get a compilation error making sage 8.9.beta9. The >> > problem is in the package "cypari", the relevant log is attached: >> >> Are you upgrading? Building from scratch? > > > I am building from scratch with python3. > >> >> >> The interesting line is >> >> error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' >> >> This appears to be related to >> https://trac.sagemath.org/ticket/28242 >> Perhaps it ought to be improved. > > > The compilation used to work fine on the machines, so that could be it? > >> >> >> It looks like you're trying to use a system installation of Pari/GP, rather >> than build Sage's Pari. What parts of Pari (Pari-related packages?) >> do you have on your Debian system? > > > The computer on which I try to compile is maintained by my department's IT, > so I am not completely aware of all the packages that might or might not be > installed. > > How can I figure out which pari (and which packages) are installed?
what is the output of gp --version and of echo 'default(datadir)' | gp -qf And what is the output of which gp Thanks. >> >> >> Anyhow, Pari in Stretch is too old, but you should be able to use the >> one from backports: >> >> https://packages.debian.org/stretch-backports/libpari-dev > > > I am afraid that I do not have the rights to install libpari systemwide. Hmm. > >> >> >> >> Thanks >> Dima >> > >> > Found local metadata for cypari-2.1.1 >> > Attempting to download package cypari2-2.1.1.tar.gz from mirrors >> > https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz >> > [......................................................................] >> > cypari-2.1.1 >> > ==================================================== >> > Setting up build directory for cypari-2.1.1 >> > Finished extraction >> > Applying patches from ../patches... >> > Applying ../patches/trashcan.patch >> > patching file cypari2/gen.pxd >> > patching file cypari2/gen.pyx >> > Hunk #1 succeeded at 141 (offset 6 lines). >> > patching file cypari2/pari_instance.pyx >> > **************************************************** >> > Host system: >> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) >> > x86_64 GNU/Linux >> > **************************************************** >> > C compiler: gcc >> > C compiler version: >> > Using built-in specs. >> > COLLECT_GCC=gcc >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper >> > Target: x86_64-linux-gnu >> > Configured with: ../src/configure -v --with-pkgversion='Debian >> > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs >> > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr >> > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared >> > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext >> > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ >> > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes >> > --with-default-libstdcxx-abi=new --enable-gnu-unique-object >> > --disable-vtable-verify --enable-libmpx --enable-plugin >> > --enable-default-pie --with-system-zlib --disable-browser-plugin >> > --enable-java-awt=gtk --enable-gtk-cairo >> > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre >> > --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 >> > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 >> > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar >> > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch >> > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 >> > --enable-multilib --with-tune=generic --enable-checking=release >> > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu >> > Thread model: posix >> > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) >> > **************************************************** >> > Package 'cypari' is currently not installed >> > No legacy uninstaller found for 'cypari'; nothing to do >> > Installing cypari-2.1.1 >> > Installing package cypari2 using pip2 >> > Ignoring indexes: https://pypi.org/simple >> > Created temporary directory: /tmp/pip-ephem-wheel-cache-EMVpJz >> > Created temporary directory: /tmp/pip-req-tracker-wfmzIV >> > Created requirements tracker '/tmp/pip-req-tracker-wfmzIV' >> > Created temporary directory: /tmp/pip-install-HkyCL2 >> > Processing >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > Created temporary directory: /tmp/pip-req-build-MoH_HZ >> > Added >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > to build tracker '/tmp/pip-req-tracker-wfmzIV' >> > Running setup.py (path:/tmp/pip-req-build-MoH_HZ/setup.py) egg_info for >> > package from >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > Running command python setup.py egg_info >> > running egg_info >> > creating pip-egg-info/cypari2.egg-info >> > writing requirements to pip-egg-info/cypari2.egg-info/requires.txt >> > writing pip-egg-info/cypari2.egg-info/PKG-INFO >> > writing top-level names to pip-egg-info/cypari2.egg-info/top_level.txt >> > writing dependency_links to >> > pip-egg-info/cypari2.egg-info/dependency_links.txt >> > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' >> > error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' >> > Cleaning up... >> > Removing source in /tmp/pip-req-build-MoH_HZ >> > Removed >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > from build tracker '/tmp/pip-req-tracker-wfmzIV' >> > Removed build tracker '/tmp/pip-req-tracker-wfmzIV' >> > Command "python setup.py egg_info" failed with error code 1 in >> > /tmp/pip-req-build-MoH_HZ/ >> > Exception information: >> > Traceback (most recent call last): >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", >> > line 143, in main >> > status = self.run(options, args) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", >> > line 318, in run >> > resolver.resolve(requirement_set) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 102, in resolve >> > self._resolve_one(requirement_set, req) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 256, in _resolve_one >> > abstract_dist = self._get_abstract_dist_for(req_to_install) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 209, in _get_abstract_dist_for >> > self.require_hashes >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", >> > line 298, in prepare_linked_requirement >> > abstract_dist.prep_for_dist(finder, self.build_isolation) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", >> > line 126, in prep_for_dist >> > self.req.run_egg_info() >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", >> > line 473, in run_egg_info >> > command_desc='python setup.py egg_info') >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", >> > line 705, in call_subprocess >> > % (command_desc, proc.returncode, cwd)) >> > InstallationError: Command "python setup.py egg_info" failed with error >> > code 1 in /tmp/pip-req-build-MoH_HZ/ >> > Error: installing with pip2 failed >> > ******************************************************************************** >> > Error installing cypari-2.1.1 >> > ******************************************************************************** >> > >> > real 0m1.345s >> > user 0m1.088s >> > sys 0m0.184s >> > ************************************************************************ >> > Error installing package cypari-2.1.1 >> > ************************************************************************ >> > Please email sage-devel (http://groups.google.com/group/sage-devel) >> > explaining the problem and including the log file >> > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log >> > Describe your computer, operating system, etc. >> > If you want to try to fix the problem yourself, *don't* just cd to >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and type >> > 'make' or whatever is appropriate. >> > Instead, the following commands setup all environment variables >> > correctly and load a subshell for you to debug the error: >> > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' && >> > '/srv/public/shared/sage/sage' --sh) >> > When you are done debugging, you can type "exit" to leave the subshell. >> > ************************************************************************ >> > Found local metadata for cypari-2.1.1 >> > Using cached file /srv/public/shared/sage/upstream/cypari2-2.1.1.tar.gz >> > cypari-2.1.1 >> > ==================================================== >> > Setting up build directory for cypari-2.1.1 >> > Finished extraction >> > Applying patches from ../patches... >> > Applying ../patches/trashcan.patch >> > patching file cypari2/gen.pxd >> > patching file cypari2/gen.pyx >> > Hunk #1 succeeded at 141 (offset 6 lines). >> > patching file cypari2/pari_instance.pyx >> > **************************************************** >> > Host system: >> > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) >> > x86_64 GNU/Linux >> > **************************************************** >> > C compiler: gcc >> > C compiler version: >> > Using built-in specs. >> > COLLECT_GCC=gcc >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper >> > Target: x86_64-linux-gnu >> > Configured with: ../src/configure -v --with-pkgversion='Debian >> > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs >> > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr >> > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared >> > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext >> > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ >> > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes >> > --with-default-libstdcxx-abi=new --enable-gnu-unique-object >> > --disable-vtable-verify --enable-libmpx --enable-plugin >> > --enable-default-pie --with-system-zlib --disable-browser-plugin >> > --enable-java-awt=gtk --enable-gtk-cairo >> > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre >> > --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 >> > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 >> > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar >> > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch >> > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 >> > --enable-multilib --with-tune=generic --enable-checking=release >> > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu >> > Thread model: posix >> > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) >> > **************************************************** >> > Package 'cypari' is currently not installed >> > No legacy uninstaller found for 'cypari'; nothing to do >> > Installing cypari-2.1.1 >> > Installing package cypari2 using pip2 >> > Ignoring indexes: https://pypi.org/simple >> > Created temporary directory: /tmp/pip-ephem-wheel-cache-4L98l9 >> > Created temporary directory: /tmp/pip-req-tracker-mosN7y >> > Created requirements tracker '/tmp/pip-req-tracker-mosN7y' >> > Created temporary directory: /tmp/pip-install-AHSkDU >> > Processing >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > Created temporary directory: /tmp/pip-req-build-eMwGZT >> > Added >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > to build tracker '/tmp/pip-req-tracker-mosN7y' >> > Running setup.py (path:/tmp/pip-req-build-eMwGZT/setup.py) egg_info for >> > package from >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > Running command python setup.py egg_info >> > running egg_info >> > creating pip-egg-info/cypari2.egg-info >> > writing requirements to pip-egg-info/cypari2.egg-info/requires.txt >> > writing pip-egg-info/cypari2.egg-info/PKG-INFO >> > writing top-level names to pip-egg-info/cypari2.egg-info/top_level.txt >> > writing dependency_links to >> > pip-egg-info/cypari2.egg-info/dependency_links.txt >> > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' >> > error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' >> > Cleaning up... >> > Removing source in /tmp/pip-req-build-eMwGZT >> > Removed >> > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src >> > from build tracker '/tmp/pip-req-tracker-mosN7y' >> > Removed build tracker '/tmp/pip-req-tracker-mosN7y' >> > Command "python setup.py egg_info" failed with error code 1 in >> > /tmp/pip-req-build-eMwGZT/ >> > Exception information: >> > Traceback (most recent call last): >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", >> > line 143, in main >> > status = self.run(options, args) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", >> > line 318, in run >> > resolver.resolve(requirement_set) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 102, in resolve >> > self._resolve_one(requirement_set, req) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 256, in _resolve_one >> > abstract_dist = self._get_abstract_dist_for(req_to_install) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", >> > line 209, in _get_abstract_dist_for >> > self.require_hashes >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", >> > line 298, in prepare_linked_requirement >> > abstract_dist.prep_for_dist(finder, self.build_isolation) >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", >> > line 126, in prep_for_dist >> > self.req.run_egg_info() >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", >> > line 473, in run_egg_info >> > command_desc='python setup.py egg_info') >> > File >> > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", >> > line 705, in call_subprocess >> > % (command_desc, proc.returncode, cwd)) >> > InstallationError: Command "python setup.py egg_info" failed with error >> > code 1 in /tmp/pip-req-build-eMwGZT/ >> > Error: installing with pip2 failed >> > ******************************************************************************** >> > Error installing cypari-2.1.1 >> > ******************************************************************************** >> > >> > real 0m1.313s >> > user 0m1.084s >> > sys 0m0.176s >> > ************************************************************************ >> > Error installing package cypari-2.1.1 >> > ************************************************************************ >> > Please email sage-devel (http://groups.google.com/group/sage-devel) >> > explaining the problem and including the log file >> > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log >> > Describe your computer, operating system, etc. >> > If you want to try to fix the problem yourself, *don't* just cd to >> > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and type >> > 'make' or whatever is appropriate. >> > Instead, the following commands setup all environment variables >> > correctly and load a subshell for you to debug the error: >> > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' && >> > '/srv/public/shared/sage/sage' --sh) >> > When you are done debugging, you can type "exit" to leave the subshell. >> > ************************************************************************ >> > >> > >> > On Tuesday, September 3, 2019 at 1:22:40 AM UTC+2, Volker Braun wrote: >> >> >> >> As always, you can get the latest beta version from the "develop" git >> >> branch. Alternatively, the self-contained source tarball is at >> >> http://www.sagemath.org/download-latest.html >> >> >> >> >> >> bdf4b23d74 (trac/develop, tag: 8.9.beta9) Updated SageMath version to >> >> 8.9.beta9 >> >> c631202c12 Trac #28411: refresh the prompt in the installation guide >> >> 45482b13f0 Trac #28387: Implement function that returns the balanced >> >> digit representation of an integer >> >> 4454ffec0d Trac #28384: py2: UnicodeDecodeError in doctest framework >> >> exception handling >> >> 0c8192c3de Trac #28366: Lattice precision timing test fails on Windows 7 >> >> due to low-ish clock resolution >> >> 5e1b351a89 Trac #28274: EnumeratedFamily should use integers as keys >> >> ec9715bb88 Trac #28172: Profile of a Finite Permutation Group >> >> dcf58df8b5 Trac #28154: SciPy: patch for missing coding lines in some >> >> source files >> >> 82d75fd335 Trac #27917: Standardize doctest headers >> >> 04d5aab185 Trac #25817: RuntimeError: Encountered operator mismatch in >> >> maxima-to-sr translation, integrate >> >> 45314bcbcf Trac #23639: Strange errors with roots() of polynomials over >> >> polynomial rings >> >> f29cee985f Trac #28419: new pyflakes miscellanous cleanup >> >> 77bddf472a Trac #28417: removed deprecated stuff in integer_mod >> >> c565a3aa0a Trac #28412: upgrade Pynac to 0.7.26 >> >> 2e47b34ab8 Trac #28408: fixing a few invalid escape sequences >> >> 877d26294b Trac #28407: py3: fix quantum_group_gap and graph_latex >> >> 3db8be3dc0 Trac #28399: remove deprecated things in integer.pyx >> >> 6a837c5ea6 Trac #27818: Meet-subsemilattice for lattices >> >> 2920f66a0e Trac #27798: Add `backend` option to associahedron and flow >> >> polytope >> >> 98f3199887 Trac #27587: Follow up to #25680: Fix tempfile handling in >> >> doctests >> >> 0719be21c2 Trac #27473: Matrix inversion fails over a Laurent series ring >> >> 842a3dcd41 Trac #27444: Expose multithreaded fflas-ffpack features >> >> cee95e6b38 Trac #28404: Sign of hypergeometric motives is sometimes wrong >> >> af8bf5ead8 Trac #28400: fixing a few roles >> >> 1cdf4955c6 Trac #28398: _richcmp_ for quaternion algebra elements >> >> abb2397287 Trac #28397: fix some wrong doctests that were not run >> >> 2465a9e494 Trac #28396: faster Möbius matrix for Hasse diagrams >> >> 4b4b5bf81b Trac #28395: Bug in is_weil_polynomial >> >> 77466c5716 Trac #28393: add self-tests for polymake >> >> a7f0a353e5 Trac #28391: dependencies file for jupymake >> >> e7a3ec0d98 Trac #28377: polymake interface broken with "non-standard" >> >> quadratic fields >> >> a535670711 Trac #28339: Random failure in src/sage/interfaces/expect.py >> >> f34f77e4da Trac #28271: Implement LexM traversal >> >> 304feb1626 Trac #28229: Generalized shifted prime tableau >> >> e570374675 Trac #27689: Implement is_pyramid, is_bipyramid, is_prism for >> >> polytopes >> >> addde7bcc7 Trac #28380: bump up the version of givaro in spkg-configure.m4 >> >> 8f1c30f031 Trac #28403: py3: crypto/block_cipher/present.py doctest >> >> failures >> >> 0ae7ffa669 Trac #25727: Prevent giac from giving localized output >> >> 109c1bd6c1 Trac #28060: Extensions of finite fields embeddings: we have >> >> inverse image but `inverse_image` throws `NotImplemented` >> >> 0c5c45c0cf Trac #27937: Fix for functorial construction of monoid algebras >> >> fee35bf412 Trac #27851: Convert sqrt(D) to UCF >> >> 3b7ef2c62c Trac #27831: Small fix for is_symmetric for matrices over CDF >> >> 8f76f4d242 Trac #27760: Generalized Permutohedra and type H4 4-uniform >> >> polytopes >> >> 67de66d92d Trac #27096: Bug in Buchberger algorithm over Tate algebra >> >> 6b8839d39f Trac #25823: maxima segfaults on integral computation >> >> 4583b4056e (tag: 8.9.beta8, trac/develop) Updated SageMath version to >> >> 8.9.beta8 >> >> >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send an >> > email to sage-r...@googlegroups.com. >> > To view this discussion on the web visit >> > https://groups.google.com/d/msgid/sage-release/78651b01-df14-4f2f-826c-d7de01833101%40googlegroups.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/71e7386e-a8bf-4a26-b446-706c65f0a91a%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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