On Debian testing running on core i7 + 16 GB RAM:
- upgrading 9.1.rc3 to 9.1.rc5 via make ptestlong *fails* (see above) ; - rebuilding afresh (make distclean ; make config ; ./configure ; make ptestlong) succeeds with one transient error (timeout) and 10 permanent errors : File Result P/T src/sage/tests/parigp.py Timed out T src/sage/schemes/elliptic_curves/ell_number_field.py 3 doctests failed P src/sage/rings/number_field/number_field.py 7 doctests failed P src/sage/rings/number_field/number_field_element.pyx 1 doctest failed P src/sage/rings/number_field/number_field_ideal.py 2 doctests failed P src/sage/numerical/backends/glpk_backend.pyx 1 doctest failed P src/sage/lfunctions/dokchitser.py 2 doctests failed P src/sage/rings/polynomial/polynomial_quotient_ring.py 2 doctests failed P src/sage/lfunctions/pari.py 1 doctest failed P src/sage/rings/number_field/unit_group.py 1 doctest failed P src/sage/libs/glpk/error.pyx 1 doctest failed P The timeout wasn’t observed already ; all other errors were. The result of the retesting of initially failing tests is attached as chkerrs.txt. HTH, Le samedi 16 mai 2020 12:22:44 UTC+2, Emmanuel Charpentier a écrit : Well, I'm still stuck. > > A data point : inna dplicate of this tree, make distclean, make config, > ./configure, make succeeds in buildig Sage 9.1.rc5. ptestlong underway. > > HTH, > > Le vendredi 15 mai 2020 13:21:35 UTC+2, Emmanuel Charpentier a écrit : >> >> Same difference : >> >> charpent@zen-book-flip:/usr/local/sage-9$ sage -sh >> >> Starting subshell with Sage environment variables set. Don't forget >> to exit when you are done. Beware: >> * Do not do anything with other copies of Sage on your system. >> * Do not use this for installing Sage packages using "sage -i" or for >> running "make" at Sage's root directory. These should be done >> outside the Sage shell. >> >> Bypassing shell configuration files... >> >> Note: SAGE_ROOT=/usr/local/sage-9 >> (sage-sh) charpent@zen-book-flip:sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* >> ls: impossible d'accéder à '/usr/local/sage-9/local/lib/*gsl*': Aucun >> fichier ou dossier de ce type >> (sage-sh) charpent@zen-book-flip:sage-9$ exit >> exit >> Exited Sage subshell. >> >> >> Le vendredi 15 mai 2020 12:29:46 UTC+2, Dima Pasechnik a écrit : >>> >>> On Fri, May 15, 2020 at 10:34 AM Emmanuel Charpentier >>> <[email protected]> wrote: >>> > >>> > Nothing : >>> > >>> > charpent@zen-book-flip:/usr/local/sage-9$ ls -l $SAGE_LOCAL/lib/*gsl* >>> > ls: impossible d'accéder à '/lib/*gsl*': Aucun fichier ou dossier de >>> ce type >>> > >>> it had to be run under sage -sh, to set $SAGE_LOCAL >>> meaningfully. >>> >>> > >>> > Le vendredi 15 mai 2020 11:08:28 UTC+2, Dima Pasechnik a écrit : >>> >> >>> >> On Fri, May 15, 2020 at 9:59 AM Emmanuel Charpentier >>> >> <[email protected]> wrote: >>> >> > >>> >> > This I was aware of and rebuilt them (successfully, it seems : I >>> rebuilt fflas_ffpack, giac and cvxopt). I still stumble on the HTML doc... >>> >> > >>> >> > Le vendredi 15 mai 2020 10:55:47 UTC+2, Dima Pasechnik a écrit : >>> >> >> >>> >> >> I also needed to rebuild the other deps of gsl, ie giac and >>> >> >> fflas_ffpack - which you had to uninstall just as you did for >>> cvxopt >>> >> >> >>> >> >> >>> >> >> On Fri, May 15, 2020 at 9:48 AM Emmanuel Charpentier >>> >> >> <[email protected]> wrote: >>> >> >> > >>> >> >> > Thank you, Dima ! >>> >> >> > >>> >> >> > However, this isn't enough. Friom the relevant portion of >>> install.log : >>> >> >> > >>> >> >> > [dochtml] Traceback (most recent call last): >>> >> >> > [dochtml] File "/usr/lib/python3.7/runpy.py", line 183, in >>> _run_module_as_main >>> >> >> > [dochtml] mod_name, mod_spec, code = >>> _get_module_details(mod_name, _Error) >>> >> >> > [dochtml] File "/usr/lib/python3.7/runpy.py", line 142, in >>> _get_module_details >>> >> >> > [dochtml] return _get_module_details(pkg_main_name, error) >>> >> >> > [dochtml] File "/usr/lib/python3.7/runpy.py", line 109, in >>> _get_module_details >>> >> >> > [dochtml] __import__(pkg_name) >>> >> >> > [dochtml] File >>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage_setup/docbuild/__init__.py", >>> >>> line 59, in <module> >>> >> >> > [dochtml] import sage.all >>> >> >> > [dochtml] File >>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/all.py", line >>> 119, in <module> >>> >> >> > [dochtml] from sage.misc.all import * # takes >>> a while >>> >> >> > [dochtml] File >>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/all.py", >>> line 84, in <module> >>> >> >> > [dochtml] from .functional import (additive_order, >>> >> >> > [dochtml] File >>> "/usr/local/sage-9/local/lib/python3.7/site-packages/sage/misc/functional.py", >>> >>> line 27, in <module> >>> >> >> > [dochtml] from sage.rings.complex_double import CDF >>> >> >> > [dochtml] ImportError: libgsl.so.23: cannot open shared object >>> file: No such file or directory >>> >> >>> >> I don't know - this seems to be the right library version. >>> >> What do get from >>> >> >>> >> ls -l $SAGE_LOCAL/lib/*gsl* >>> >> >>> >> ? >>> >> >>> >> >> > make[3]: *** [Makefile:2013: doc-html] Error 1 >>> >> >> > >>> >> >> > Is there somethoing specific to clean ? >>> >> >> > >>> >> >> > >>> >> >> > Le vendredi 15 mai 2020 08:42:08 UTC+2, Dima Pasechnik a écrit : >>> >> >> >> >>> >> >> >> make cvxopt-clean >>> >> >> >> >>> >> >> >> >>> >> >> >> >>> >> >> >> On Fri, 15 May 2020 at 06:27, Emmanuel Charpentier < >>> [email protected]> wrote: >>> >> >> >>> >>> >> >> >>> Okay. How do you uninstall them ? The ./sage -advanced >>> commmand doesn't suggest anything... >>> >> >> >>> >>> >> >> >>> >>> >> >> >>> Le jeudi 14 mai 2020 22:36:30 UTC+2, Matthias Köppe a écrit : >>> >> >> >>>> >>> >> >> >>>> On Thursday, May 14, 2020 at 1:02:38 PM UTC-7, Emmanuel >>> Charpentier wrote: >>> >> >> >>>>> >>> >> >> >>>>> On Debian testing, upgrading from 9.1.rc3 fails early on >>> longsl23 not beaing resent (I have libgsl25). >>> >> >> >>>>> >>> >> >> >>>>> Is there a way to avoid rebuilding from scratch (make >>> distclean...) ? >>> >> >> >>>>> >>> >> >> >>>> >>> >> >> >>>> It should suffice to uninstall the sage packages that depend >>> on gsl >>> >> >> >>>> >>> >> >> >>>> $ grep gsl build/pkgs/*/dependencies >>> >> >> >>>> >>> >> >> >>>> build/pkgs/cvxopt/dependencies:$(PYTHON) numpy $(BLAS) gsl >>> glpk suitesparse | $(PYTHON_TOOLCHAIN) pkgconfig nose matplotlib >>> >> >> >>>> >>> >> >> >>>> build/pkgs/fflas_ffpack/dependencies:$(MP_LIBRARY) givaro gsl >>> $(BLAS) | pkgconf >>> >> >> >>>> >>> >> >> >>>> build/pkgs/giac/dependencies:readline libpng $(MP_LIBRARY) >>> mpfr mpfi ntl gsl pari >>> >> >> >>> >>> >> >> >>> -- >>> >> >> >>> You received this message because you are subscribed to the >>> Google Groups "sage-release" group. >>> >> >> >>> To unsubscribe from this group and stop receiving emails from >>> it, send an email to [email protected]. >>> >> >> >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/6d6d1de3-45b0-4f92-894d-1f51eb7e75b8%40googlegroups.com. >>> >>> >>> >> >> > >>> >> >> > -- >>> >> >> > You received this message because you are subscribed to the >>> Google Groups "sage-release" group. >>> >> >> > To unsubscribe from this group and stop receiving emails from >>> it, send an email to [email protected]. >>> >> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/4ffa9e93-c129-428f-8a83-776d362c5dd6%40googlegroups.com. >>> >>> >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>> Groups "sage-release" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to [email protected]. >>> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/4220f0bd-c77f-4077-98ff-461c61fd8e03%40googlegroups.com. >>> >>> >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-release" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/954da0b6-255f-42d1-aca4-7dbd31e742c8%40googlegroups.com. >>> >>> >>> >> -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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