After rebuilding and reinstalling the same (really) optional packages, `ptestlong` gets exactly one (reproducible) failure, i. e. the one reported by Samuel Lelièvre.
I am at loss as to why I needed to rebuild 9.5 from sratch instead of upgrading from 9.3. Ideas ? HTH, Le samedi 30 octobre 2021 à 17:55:30 UTC+2, Emmanuel Charpentier a écrit : > Aaaarghhh : cypari2 is installed by Sage itself : after (some operations > amounting to removing Python packages, then) make distclean && make : > > charpent@zen-book-flip:/usr/local/sage-9$ sage -optional | grep -v ot_instal > /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage/misc/package.py:116: > UserWarning: failed to fetch the version of pkg='ore_algebra' at > https://pypi.org/pypi/ore_algebra/json > warnings.warn("failed to fetch the version of pkg={!r} at {}".format(pkg, > url)) > [package]...............................[latest version] ([version]) > > cypari2.................................? (2.1.2) > python_dateutil.........................? (2.8.1) > sagemath_standard.......................? (9.5b5) > > I’ll reinstall the other packages and retest notwithstanding… > > > Le samedi 30 octobre 2021 à 14:40:35 UTC+2, Emmanuel Charpentier a écrit : > >> I tried to upgrade 9.5.beta3 to 9.5.beta5 ith the following packages >> installed : >> >> cmdstanpy...............................? (0.9.77) >> cypari2.................................? (2.1.2) >> dot2tex.................................2.11.3.p0 (2.11.3.p0) >> fricas..................................1.3.7.p1 (1.3.7.p1) >> gap_packages............................4.11.1 (4.11.1) >> json5...................................? (0.9.6) >> jupyterlab..............................3.2.1 (2.2.10) >> jupyterlab_server.......................? (1.2.0) >> jupyterlab_widgets......................none (2.0) >> libsemigroups...........................1.1.0 (1.1.0) >> nodeenv.................................1.6.0 (1.4.0) >> nodejs..................................none (12.18.3) >> nose....................................? (1.3.7) >> pandas..................................? (1.3.3) >> psutil..................................? (5.2.0.p2) >> python_dateutil.........................? (2.8.1) >> sagemath_standard.......................? (9.5b5) >> ujson...................................? (4.2.0) >> >> ptestlong gives the following looong list of failures crashing Sage : >> >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/elliptic_curves/isogeny_small_degree.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/elliptic_curves/ell_rational_field.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/elliptic_curves/ell_number_field.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/cyclic_covers/cycliccover_finite_field.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/pollack_stevens/modsym.py # 9 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/number_field/number_field.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform/element.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/dynamics/arithmetic_dynamics/projective_ds.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/graphs/generic_graph.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform/ring.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/tests/books/computational-mathematics-with-sagemath/combinat_doctest.py >> # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/elliptic_curves/heegner.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/interfaces/fricas.py # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/btquotients/pautomorphicform.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/misc/sageinspect.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix_integer_dense_hnf.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/local_comp/local_comp.py # 4 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform_hecketriangle/hecke_triangle_group_element.py # 8 >> doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modules/free_module_integer.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/elliptic_curves/ell_curve_isogeny.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform_hecketriangle/graded_ring_element.py # 25 doctests >> failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 src/sage/arith/misc.py >> # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/qqbar.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform_hecketriangle/readme.py # 12 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix2.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/combinat/tutorial.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/quadratic_forms/genera/genus.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/calculus/calculus.py # 5 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform_hecketriangle/abstract_space.py # 21 doctests >> failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/combinat/partition.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/abvar/abvar.py # 10 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform/ambient_R.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix_integer_dense.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/misc/cachefunc.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/algebras/quatalg/quaternion_algebra.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform/constructor.py # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modules/free_quadratic_module_integer_symmetric.py # Killed due to >> segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/en/thematic_tutorials/explicit_methods_in_number_theory/birds_other.rst >> # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/abvar/lseries.py # 8 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modsym/space.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/benchmark.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/btquotients/btquotient.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/number_field/S_unit_solver.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/overconvergent/genus0.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/hecke/submodule.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/typeset/ascii_art.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform_hecketriangle/element.py # 10 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/functions/log.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/schemes/plane_conics/con_rational_function_field.py # Killed due >> to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/structure/sage_object.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix_rational_dense.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/ipython_extension.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/interpreter.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/hecke/module.py # 2 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/number_field/order.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modules/fg_pid/fgp_module.py # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/ja/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/combinat/quickref.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/fr/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/tr/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/pt/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/de/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/graphs/base/static_sparse_graph.pyx # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/hu/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/it/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/en/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix_cyclo_dense.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/es/a_tour_of_sage/index.rst # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/combinat/combinat.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/functions/transcendental.py # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/matrix_integer_sparse.pyx # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modsym/subspace.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/hecke/element.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modsym/tests.py # 1 doctest failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/display/formatter.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/interface_magic.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/doc/en/thematic_tutorials/explicit_methods_in_number_theory/modabvar.rst >> # 3 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/tests/book_stein_modform.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/ipython_tests.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/attach.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/abvar/cuspidal_subgroup.py # 9 doctests failed >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/polynomial/real_roots.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/quadratic_forms/quadratic_form__local_density_interfaces.py # >> Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/constructor.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/modform/vm_basis.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/bernmm.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/repl/rich_output/backend_ipython.py # Killed due to segmentation >> fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/modular/buzzard.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/interfaces/macaulay2.py # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/libs/flint/arith.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/matrix/misc.pyx # Killed due to segmentation fault >> sage -t --long --warn-long 215.7 >> --random-seed=276876733579103606015550424535934104048 >> src/sage/rings/bernoulli_mod_p.pyx # Killed due to segmentation fault >> >> Python error messages *seen* (but not logged) during ptestlong or >> attempts to reproduce the tests point to a problem in cypari2 which >> somehow managed to invite itself. >> >> I’ll try to recompile after distclean, reinstall packages (cautiously >> avoiding cypari2), retest and report. >> >> HTH, >> >> >> Le vendredi 29 octobre 2021 à 23:42:11 UTC+2, Volker Braun a écrit : >> >>> As always, you can get the latest beta version from the "develop" git >>> branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>> f716a0b366 (tag: 9.5.beta5, trac/develop) Updated SageMath version to >>> 9.5.beta5 >>> c5a87834e7 Trac #32758: fix E713 and E714 in schemes >>> 50776daec4 Trac #32757: last fixes for relint linter >>> d95005e277 Trac #32756: fix E713 and E714 in combinat >>> 60c6b1911d Trac #32755: fix E713 and E714 in rings >>> 8a27526e7c Trac #32722: argcomplete should be a standard package >>> bac0d56c89 Trac #32660: Add >>> sage.rings.abc.{AlgebraicField,...,NumberField_quadratic}, deprecate >>> is_AlgebraicField, ..., is_CyclotomicField, is_QuadraticField >>> 7dd78eff36 Trac #2877: security risk -- restrict the input of eval in CC >>> constructor >>> cf1a7a533d Trac #32205: Removing deprecated parameters and methods in >>> projective_ds >>> 0574dae5f9 Trac #32635: sage.matrix.matrix_space: Import element classes >>> on demand, fall back to generic on ImportError >>> 61d9294bcd Trac #32743: use .pair() for quaternions instead of inlining >>> the definition >>> bf65712f5f Trac #32739: change order of indices in doc test of quantum >>> determinant >>> cd3aa6fbac Trac #32555: Typo in doc/en/developer/portability_testing.rst >>> 72e76991cd Trac #32446: fix doctest formatting in >>> schemes/elliptic_curves/ell_curve_isogeny.py >>> 363c071d57 Trac #32632: computing elliptic-curve isomorphisms in >>> characteristic 2 sometimes fails >>> 9fdf3832f9 Trac #32630: Fix docstring in Polyhedron method >>> representative_point >>> a15c58c9d6 Trac #32582: Add colored Jones polynomial >>> f35c2c81c3 Trac #17442: Italian translation of tutorial >>> c1a55a62d1 Trac #32729: working on annotations in combinat >>> 37afc35b18 Trac #32728: Get rid of <type in doctests and the mechanism >>> that allows this >>> d8e6aed16d Trac #32717: Move sage.functions.other.sqrt to >>> sage.misc.functional >>> 5ddfc23e0a Trac #32695: 5 internet doctests failing in >>> src/sage/databases/oeis.py >>> 753406109a Trac #32656: Eliminate psutil (memory management) dependency >>> 04a39c6e1b Trac #29024: spkg-configure.m4 for singular >>> 8ba7c02710 Trac #28207: Derivative of piecewise function returns junk >>> b970bc92d1 Trac #32737: Fix doctest in src/sage/rings/integer.pyx >>> ec536c7872 Trac #32495: EllipticCurveIsogeny._richcmp_ does not use the >>> kernel polynomial >>> 9750b0ef92 Trac #32490: multiplication_by_m_isogeny is only correct up >>> to automorphism >>> b6b1b25e77 Trac #32469: Improve ecl interface >>> 7407db130b Trac #32445: Do not access M4RI internals >>> 5e674821ad Trac #32440: shifting power series doesn't keep track of >>> precision correctly >>> bc6791f518 Trac #32430: remove obsolete code in >>> EllipticCurveIsogeny.is_normalized() >>> 225ac125f8 Trac #32723: Helper function to avoid duplicated code when >>> using weights >>> 1a9bb6d29d Trac #32680: more pycodestyle checks again >>> 3c6a07afc9 Trac #32727: complete mpir deletion >>> 56ec53a51b Trac #32712: sage.tensor.modules: make doctests involving SR >>> optional >>> 11684c278f Trac #32708: sage.tensor.modules: remove dependency on >>> sage.manifolds >>> a8e7da2709 Trac #32691: setuptools: Upgrade to 58.2.0, remove old >>> easy_install patch >>> 4e42232b97 Trac #32690: add factor method to interval-posets >>> e87eb57a8e Trac #32685: Ill-placed y label in >>> sage.manifolds.utilities.set_axes_labels >>> 20e5ed68cc Trac #32684: various details in combinat and functions >>> e75948b94e Trac #32637: Add sage.geometry.abc; remove uses of >>> is_Polyhedron, is_LatticePolytope, is_Cone outside of sage.geometry >>> 08d189cd3a Trac #32607: compatibility with gsl 2.7 >>> fa012254ac Trac #32665: Deprecate is_[Callable]SymbolicExpressionRing, >>> remove use of is_Symbolic{Equation,Variable}, is_CallableSymbolicExpression >>> e7f6b13107 Trac #32649: Replace sage.doctest.external.has_* functions by >>> Features >>> aac663be0d Trac #32659: sdh_pip_install: Force reinstallation of built >>> wheels; add sage_setup source deps >>> 056b8d4e7b (tag: 9.5.beta4) Updated SageMath version to 9.5.beta4 >>> >>> -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/1023feb0-8bc5-4452-8a88-ee82df5501ebn%40googlegroups.com.
