On 20 August 2024 09:06:24 BST, Enrique Artal <[email protected]> wrote:
>There is a new cddlib rpm for fedora which tries to solve the problem. It
>doesn't for me but I am not sure if it is because I do something wrong,
>since I get the same errors with former packages. Can someone else with
>access to Fedora 40 make the test?
I can do this next week. Afk now.
>Anyway, I do not know how to proceed when a system package is updated.
when a system library is updated, and is not compatible with the previous
version (some updates might be e.g. just adding new functionality)
then the Python modules using it, and excutables/libraries using it, might need
a rebuild.
In most cases it's just sagelib which needs a rebuild:
make sagelib-clean sagelib-uninstall && make build
will do the job.
However in case of cddlib, there are more packages which depend on it, e.g.
singular.
(although you might get Singular from OS, too, then you don't need to (re)build
it, obviously.)
git grep cdd build/pkgs/*/dep*
should give you an idea what needs a rebuild.
Dima
> Must
>sage be rebuilt? The exact steps would be helpful. Best, Enrique.
>
>El sábado, 17 de agosto de 2024 a las 17:24:39 UTC+2, Enrique Artal
>escribió:
>
>> Sorry, I misunderstood and put the print in
>> rings/polynomial/groebner_fan.py and put the output of the test of the
>> changed function. I put now
>>
>> print("ans = ", ans)
>> print('err = ', err)
>> in interfaces/gfan.py and got
>>
>> ans = Q[x,y]
>> {{
>> x^2+1-y^2}
>> ,
>> {
>> y^2-1-x^2}
>> }
>>
>> err = Falling back on CddLib
>> Falling back on CddLib
>>
>>
>>
>> El sábado, 17 de agosto de 2024 a las 14:23:55 UTC+2, Dima Pasechnik
>> escribió:
>>
>>>
>>>
>>> On 17 August 2024 10:39:35 BST, Enrique Artal <[email protected]>
>>> wrote:
>>> >Sorry, with the spkg it is;
>>> >b'{\n(3,7,1),\n(5,1,2),\n(7,1,4),\n(5,1,4),\n(1,1,1),\n(1,4,8),\n(1,4,10)}\n'
>>> >
>>>
>>> >b'List of linked LP solvers:\n cddgmp\n cdd\n'
>>> >[(3, 7, 1), (5, 1, 2), (7, 1, 4), (5, 1, 4), (1, 1, 1), (1, 4, 8), (1,
>>> 4,
>>> >10)]
>>>
>>> That is, no runtime error raised for you?
>>> Or it comes later?
>>>
>>> >El sábado, 17 de agosto de 2024 a las 11:35:33 UTC+2, Enrique Artal
>>> >escribió:
>>> >
>>> >> For the test in line 967 in
>>> src/sage/rings/polynomial/groebner_basis.py,
>>> >> after adding print(ans, err) to weight_vectors it gives
>>> >> spkg: [(3, 7, 1), (5, 1, 2), (7, 1, 4), (5, 1, 4), (1, 1, 1), (1, 4,
>>> 8),
>>> >> (1, 4, 10)]
>>> >> system:
>>> b'{\n(3,7,1),\n(5,1,2),\n(7,1,4),\n(5,1,4),\n(1,1,1),\n(1,4,8),\n(1,4,10)}\n'
>>>
>>>
>>> >> b'List of linked LP solvers:\n SoPlexCddGmp\n cddgmp\n cdd\n'
>>> >> [(3, 7, 1), (5, 1, 2), (7, 1, 4), (5, 1, 4), (1, 1, 1), (1, 4, 8), (1,
>>> 4,
>>> >> 10)]
>>> >>
>>> >> El viernes, 16 de agosto de 2024 a las 22:58:22 UTC+2, Dima Pasechnik
>>> >> escribió:
>>> >>
>>> >>>
>>> >>>
>>> >>> On 16 August 2024 19:39:02 BST, Enrique Artal <[email protected]>
>>> >>> wrote:
>>> >>> >Reported: https://bugzilla.redhat.com/show_bug.cgi?id=2305344
>>> >>> >Already got a reply (and I do not know what to say):
>>> >>> >
>>> >>> >%%%%%%
>>> >>> >The only important difference between the Fedora 39 and 40 cddlib
>>> >>> package
>>> >>> >builds is the addition of this upstream commit:
>>> >>> >
>>> >>>
>>> https://github.com/cddlib/cddlib/commit/1210faf9ee9cf02e29fc67e11a8ea4e847c58ddd
>>>
>>> >>> >Does sagemath access cddlib from multiple threads and assume they
>>> will
>>> >>> >share data? %%%%%%
>>> >>> >
>>> >>> >El martes, 13 de agosto de 2024 a las 23:03:16 UTC+2,
>>> >>> [email protected]
>>> >>> >escribió:
>>> >>> >
>>> >>> >> I think it would be worth reporting it as a bug to Fedora.
>>> >>> >>
>>> >>> >> On Monday, August 12, 2024 at 9:26:18 AM UTC-7 [email protected]
>>> >>> wrote:
>>> >>> >>
>>> >>> >>> I had similar errors with system cddlib also in Fedora 40 and
>>> with a
>>> >>> >>> previous version, see https://github.com/sagemath/sage/pull/38358;
>>>
>>> >>> >>> forcing the installation of the package, it works. I do not know
>>> why.
>>> >>> >>>
>>> >>> >>> El lunes, 12 de agosto de 2024 a las 11:36:14 UTC+2,
>>> >>> [email protected]
>>> >>> >>> escribió:
>>> >>> >>>
>>> >>> >>>> On Fedora 40 I get
>>> >>> >>>>
>>> >>> >>>>
>>> >>>
>>> ----------------------------------------------------------------------
>>> >>> >>>> sage -t --long --warn-long 29.7
>>> >>> >>>> --random-seed=312965183184317696093439207698161157083
>>> >>> src/sage/rings/pol
>>> >>> >>>> ynomial/multi_polynomial_ideal.py # 1 doctest failed
>>> >>> >>>> sage -t --long --warn-long 29.7
>>> >>> >>>> --random-seed=312965183184317696093439207698161157083
>>> >>> src/sage/rings/pol
>>> >>> >>>> ynomial/groebner_fan.py # 47 doctests failed
>>> >>> >>>>
>>> >>>
>>> ----------------------------------------------------------------------
>>> >>> >>>> Those failures were already known in sage-10.4.rcx
>>> >>> >>>>
>>> >>> >>>> Doctesting 1 file.
>>> >>> >>>> sage -t --long --warn-long 29.7
>>> >>> >>>> --random-seed=312965183184317696093439207698161157083
>>> >>> src/sage/rings/pol
>>> >>> >>>> ynomial/multi_polynomial_ideal.py
>>> >>> >>>>
>>> >>>
>>> **********************************************************************
>>> >>> >>>> File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line
>>> >>> 4181,
>>> >>> >>>> in sage.rings.polynomial.multi_po
>>> >>> >>>> lynomial_ideal.NCPolynomialIdeal.groebner_fan
>>> >>> >>>> Failed example:
>>> >>> >>>> g.reduced_groebner_bases()
>>> >>> >>>> Exception raised:
>>> >>> >>>> Traceback (most recent call last):
>>> >>> >>>> File
>>> >>> >>>>
>>> >>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/rings/polynomial/groebner_fan.py",
>>>
>>>
>>> >>>
>>> >>> >>>> line 1057, i
>>> >>> >>>> n reduced_groebner_bases
>>> >>> >>>> return self.__reduced_groebner_bases
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> AttributeError: 'GroebnerFan' object has no attribute
>>> >>> >>>> '_GroebnerFan__reduced_groebner_bases'. Did yo
>>> >>> >>>> u mean: '_GroebnerFan__is_groebner_basis'?
>>> >>> >>>>
>>> >>> >>>> During handling of the above exception, another exception
>>> occurred:
>>> >>> >>>>
>>> >>> >>>> Traceback (most recent call last):
>>> >>> >>>> File
>>> >>> >>>>
>>> >>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/rings/polynomial/groebner_fan.py",
>>>
>>>
>>> >>>
>>> >>> >>>> line 1008, i
>>> >>> >>>> n _gfan_reduced_groebner_bases
>>> >>> >>>> return self.__gfan_reduced_groebner_bases
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> AttributeError: 'GroebnerFan' object has no attribute
>>> >>> >>>> '_GroebnerFan__gfan_reduced_groebner_bases'
>>> >>> >>>>
>>> >>> >>>> During handling of the above exception, another exception
>>> occurred:
>>> >>> >>>>
>>> >>> >>>> Traceback (most recent call last):
>>> >>> >>>> File
>>> >>> >>>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/doctest/forker.py",
>>> >>> line 715,
>>> >>> >>>> in _run
>>> >>> >>>> self.compile_and_execute(example, compiler, test.globs)
>>> >>> >>>> File
>>> >>> >>>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/doctest/forker.py",
>>> >>> line
>>> >>> >>>> 1145, in compile_and_e
>>> >>> >>>> xecute
>>> >>> >>>> exec(compiled, globs)
>>> >>> >>>> File "<doctest
>>> >>> >>>>
>>> >>>
>>> sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebner_fan[3]>",
>>>
>>>
>>> >>>
>>> >>> >>>> l
>>> >>> >>>> ine 1, in <module>
>>> >>> >>>> g.reduced_groebner_bases()
>>> >>> >>>> File
>>> >>> >>>>
>>> >>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/rings/polynomial/groebner_fan.py",
>>>
>>>
>>> >>>
>>> >>> >>>> line 1059, i
>>> >>> >>>> n reduced_groebner_bases
>>> >>> >>>> G = self._gfan_reduced_groebner_bases()
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> File
>>> >>> >>>>
>>> >>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/rings/polynomial/groebner_fan.py",
>>>
>>>
>>> >>>
>>> >>> >>>> line 1010, i
>>> >>> >>>> n _gfan_reduced_groebner_bases
>>> >>> >>>> B = self.gfan(cmd='bases')
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> File
>>> >>> >>>>
>>> >>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/rings/polynomial/groebner_fan.py",
>>>
>>>
>>> >>>
>>> >>> >>>> line 1132, i
>>> >>> >>>> n gfan
>>> >>> >>>> s = gfan(I, cmd, verbose=self.__verbose)
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> File
>>> >>> >>>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/misc/decorators.py",
>>> >>> line
>>> >>> >>>> 656, in wrapper
>>> >>> >>>> return func(*args, **kwds)
>>> >>> >>>> ^^^^^^^^^^^^^^^^^^^
>>> >>> >>>> File
>>> >>> >>>>
>>> "/home/jaap/sagemath/sage-10.5.beta2/src/sage/interfaces/gfan.py",
>>> >>> line
>>> >>> >>>> 118, in __call__
>>> >>> >>>> raise RuntimeError(err)
>>> >>> >>>> RuntimeError: Falling back on CddLib
>>> >>> >>>> Falling back on CddLib
>>> >>>
>>> >>> line 113 in this file, before the error is caught,
>>> >>> is
>>> >>> ans, err = gfan_processes.communicate(input=input)
>>> >>>
>>> >>> What `ans` and `err` do you get while running this test?
>>> >>> (add a print and see, please)
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>> >>>>
>>> >>> >>>>
>>> >>>
>>> **********************************************************************
>>> >>> >>>> 1 item had failures:
>>> >>> >>>> 1 of 5 in
>>> >>> >>>>
>>> >>>
>>> sage.rings.polynomial.multi_polynomial_ideal.NCPolynomialIdeal.groebner_fan
>>> >>> >>>> [986 tests, 1 failure, 3.74 s]
>>> >>> >>>>
>>> >>>
>>> ----------------------------------------------------------------------
>>> >>> >>>> sage -t --long --warn-long 29.7
>>> >>> >>>> --random-seed=312965183184317696093439207698161157083
>>> >>> src/sage/rings/pol
>>> >>> >>>> ynomial/multi_polynomial_ideal.py # 1 doctest failed
>>> >>> >>>>
>>> >>>
>>> ----------------------------------------------------------------------
>>> >>> >>>> Total time for all tests: 4.3 seconds
>>> >>> >>>> cpu time: 3.6 seconds
>>> >>> >>>> cumulative wall time: 3.7 seconds
>>> >>> >>>>
>>> >>> >>>>
>>> >>> >>>> Jaap
>>> >>> >>>>
>>> >>> >>>> On Sat, Aug 10, 2024 at 11:29 PM Volker Braun <
>>> [email protected]>
>>> >>> >>>> wrote:
>>> >>> >>>>
>>> >>> >>>>> As always, you can get the latest beta version from the
>>> "develop"
>>> >>> git
>>> >>> >>>>> branch. Alternatively, the self-contained source tarball is at
>>> >>> >>>>> http://www.sagemath.org/download-latest.html
>>> >>> >>>>>
>>> >>> >>>>>
>>> >>> >>>>> e042294b5ed (HEAD -> develop, tag: 10.5.beta2, github/develop)
>>> >>> Updated
>>> >>> >>>>> SageMath version to 10.5.beta2
>>> >>> >>>>> b178c10a740 (origin/develop) gh-38492: expose fplll enumeration
>>> >>> >>>>> routines in IntegralLattice
>>> >>> >>>>> 8587c1351b7 gh-38479: Choose special name to avoid '@c' by
>>> >>> singular's
>>> >>> >>>>> absFactorize
>>> >>> >>>>> 95a580db85e gh-38476: Include modular composition for
>>> polynomial
>>> >>> rings
>>> >>> >>>>> over finite fields
>>> >>> >>>>> cac6e29f1a8 gh-38470: `build/pkgs/furo`: Set lower bound
>>> >>> >>>>> 6522292ad72 gh-38466: introduce half-angle transformations
>>> >>> >>>>> 80ba1d5955c gh-38458: simplify conversion code in cubic Hecke
>>> >>> >>>>> 7c41ea58284 gh-38444: Moving ideal methods to category of rings
>>> >>> >>>>> b20628a403f gh-38442: `build/pkgs/gcc`: Update to 13.3
>>> >>> >>>>> a58fd635e62 gh-38433: Make # abs tol compare over the complex
>>> >>> numbers
>>> >>> >>>>> 896eee58941 gh-38432: fix memory leak in is_planar
>>> >>> >>>>> cee79e3abe2 gh-38414: Properly check dimension in curve
>>> constructor
>>> >>> >>>>> ce92b938f24 gh-38409: `xgcd` for multiple arguments
>>> >>> >>>>> d83f90cfafc gh-38395: get rid of some sage-eval in gap3-related
>>> >>> code
>>> >>> >>>>> f369f6576f5 gh-38347: support passing two base points to .log()
>>> for
>>> >>> >>>>> elliptic-curve points
>>> >>> >>>>> 8abb61cab64 gh-38331: use pkg-config to find msolve, otherwise
>>> try
>>> >>> to
>>> >>> >>>>> run it
>>> >>> >>>>> 66f679d6f29 gh-38330: Lattes to curve function code commits for
>>> >>> >>>>> enhancement #38329
>>> >>> >>>>> 8d9da51214c gh-38323: some fixes for ruff code C41 (about loops
>>> and
>>> >>> >>>>> iteration)
>>> >>> >>>>> 5be4da7b396 gh-38296: Deprecate `is_SchemeMorphism`,
>>> >>> >>>>> `is_SchemeTopologicalPoint`
>>> >>> >>>>> 095e6ee6579 gh-38273: Update the deprecation policy
>>> >>> >>>>> a1deb75ea13 gh-38185: Simplify doc build process by removing
>>> empty
>>> >>> >>>>> directories locally
>>> >>> >>>>> 27c9b02a90e gh-37372: Strength 2 Covering Array constructions
>>> >>> >>>>> 0f3477394fb (tag: 10.5.beta1) Updated SageMath version to
>>> >>> 10.5.beta1
>>> >>> >>>>>
>>> >>> >>>>> --
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>>>
>>>
>>> >>>
>>> >>> >>>>> .
>>> >>> >>>>>
>>> >>> >>>>
>>> >>> >
>>> >>>
>>> >>
>>> >
>>>
>>
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