Any suggestion on the ways to solve the present problem ? The only one I can think of would be to revert to 10.5.beta7 (by detaching head), `make build` then `make`.
Advice ? Le lundi 28 octobre 2024 à 14:33:39 UTC+1, Dima Pasechnik a écrit : > The upgrade to GAP 4.13.1 simply missed the necessary libsemigroups bump. > - they should be done in lockstep. > > What happens, I think, is that GAP semigroup package tries instead to > build its own libsemigroup, but it does not work. > > > On Mon, Oct 28, 2024 at 10:11 AM Emmanuel Charpentier > <[email protected]> wrote: > > > > And, BTW : > > > > (sage-buildsh) charpent@SAP5342949:sage-10$ ls $PKG_CONFIG_PATH > Singular.pc cblas.pc fflas-ffpack.pc gsl.pc libpolys.pc msolve.pc bdw-gc.pc > eclib.pc fplll.pc lapack.pc libsemigroups.pc omalloc.pc blas.pc factory.pc > givaro.pc libgap.pc linbox.pc singular_resources.pc > > > > HTH, > > > > Le lundi 28 octobre 2024 à 11:07:17 UTC+1, Emmanuel Charpentier a écrit : > >> > >> No such luck (see previous post for config) : > >> > >> Le lundi 28 octobre 2024 à 09:25:27 UTC+1, Dima Pasechnik a écrit : > >> > >> I think it is probably a Sage's spkgs' dependincies bug. (you need > pkg-config for the packages involved). > >> > >> In more detail, > >> GAP package semigroups's sources carry a vendored version of > libsemigroups, but it should not be used. Instead its ./configure should > find the external (to it) libsemigroups installation, and use it. > >> > >> The build script of gap_packages does deal with -I options for > particular packages, it assumes that this is taken care of by the > aforementioned ./configure - which in this case should figure out that the > correct -I by calling > >> > >> pkg-config --cflags libsemigroups > >> > >> Can you check if it works? (invoke ./sage --buildsh > >> and in this shell execute the call above) > >> > >> charpent@SAP5342949:/usr/local/sage-10$ ./sage --buildsh Starting > subshell with Sage environment variables set. Don't forget to exit when you > are done. Beware: * Do not do anything with other copies of Sage on your > system. * Do not use this for installing Sage packages using "sage -i" or > for running "make" at Sage's root directory. These should be done outside > the Sage shell. Bypassing shell configuration files... Note: > SAGE_ROOT=/usr/local/sage-10 (sage-buildsh) charpent@SAP5342949:sage-10$ > pkg-config --cflags libsemigroup Package libsemigroup was not found in the > pkg-config search path. Perhaps you should add the directory containing > `libsemigroup.pc' to the PKG_CONFIG_PATH environment variable Package > 'libsemigroup', required by 'virtual:world', not found > >> > >> However (in another window) : > >> > >> charpent@SAP5342949:/usr/local/sage-10$ ./sage -optional | grep -v > ot_instal /usr/local/sage-10/src/sage/misc/package.py:118: UserWarning: > failed to fetch the version of pkg='auditwheel_or_delocate' at > https://pypi.org/pypi/auditwheel_or_delocate/json warnings.warn("failed > to fetch the version of pkg={!r} at {}".format(pkg, url)) > /usr/local/sage-10/src/sage/misc/package.py:118: UserWarning: failed to > fetch the version of pkg='ore_algebra' at > https://pypi.org/pypi/ore_algebra/json warnings.warn("failed to fetch the > version of pkg={!r} at {}".format(pkg, url)) > [package]...............................[latest version] ([version]) > build...................................? (1.2.1) > cypari2.................................? (2.2.0) > dot2tex.................................2.11.3.p0 (2.11.3.p0) > fricas..................................1.3.11 (1.3.11) > gap_jupyter.............................0.9 (0.9) > hatch_fancy_pypi_readme.................? (24.1.0) > hatch_vcs...............................? (0.4.0) > jmol....................................14.29.52 (14.29.52) > jupyter_jsmol...........................2022.1.0 (2022.1.0) > jupyter_kernel_gap......................? (0.9) > jupyter_kernel_singular.................? (0.9.7) > libsemigroups...........................2.3.2 (2.3.2) > msolve..................................0.6.5 (0.6.5) > pysingular..............................0.9.7 (0.9.7) > python3_venv............................? (3.12--usr-bin-python3) > python_dateutil.........................? (2.9.0.post0) > sagemath................................? (0.0.0) > sagemath_standard.......................? (10.5b8) > singular_jupyter........................0.9.7 (0.9.7) > >> > >> Stuck… > >> > >> > >> In fact, pkg-config should be a dependency of libsemigroups (pkgconf > should be in build/pkgs/libsemigroups/dependencies), and of gap_packages > (pkgconf should be in build/pkgs/gap_packages/dependencies). > >> > >> But it is not -- so this is a Sage bug, potentially being the reason > behind your problem. > >> > >> > >> > >> > >> > >> On 28 October 2024 01:49:55 GMT, Marc Culler <[email protected]> > wrote: > >> >I know that libsemigroups is a separate spkg. That is not the issue. In > >> >fact the missing header file exists in the Sage tree, both in the > >> >local/include directory and in the gap_packages build directory (which > is > >> >still there because the build failed). > >> > > >> >% find . -name TextFlow.hpp > >> >./local/include/libsemigroups/textflowcpp/TextFlow.hpp > >> > >./local/var/tmp/sage/build/gap_packages-4.13.1/src/pkg/semigroups/libsemigroups/extern/textflowcpp/TextFlow.hpp > >> > > >> >The problem is that the build script for the new gap_packages spkg is > not > >> >setting the options needed to make the compiler look in either of those > >> >places. I would assume that a -I option is missing somewhere. Perhaps a > >> >patch is needed to add that option in the appropriate place. > >> > > >> >Here is the compiler command that generates the error, copied from the > log > >> >file: > >> > > >> >[spkg-install] g++ -std=gnu++11 -std=gnu++11 -pthread -O2 > >> >-mmacosx-version-min=11.0 -stdlib=libc++ -fno-common -MQ > gen/src/bipart.o > >> >-MMD -MP -MF gen/src/bipart.d -I./bin/include > -I./bin/include/libsemigroups > >> >-std=gnu++14 -O3 -Igapbind14/include/ > >> >-Ilibsemigroups/extern/fmt-8.0.1/include -Ilibsemigroups/include > >> >-DFMT_HEADER_ONLY -DNDEBUG -O2 -mmacosx-version-min=11.0 > -stdlib=libc++ -o > >> >gen/src/bipart.o -I/private/var/tmp/sage-10.5-current/local/include/gap > >> >-I/private/var/tmp/sage-10.5-current/local/include -DUSE_GASMAN=1 -c > >> >src/bipart.cpp > >> > > >> >It seems to be looking in libsemigroups/include but it should also be > >> >looking in libsemigroups/include/extern. > >> > > >> >- Marc > >> > > >> >On Sun, Oct 27, 2024 at 6:26 PM Dima Pasechnik <[email protected]> > wrote: > >> > > >> >> libsemigroups is a separate spkg, it is (or it should be) a pre-req > for > >> >> gap_packages > >> >> > >> >> > >> >> On 27 October 2024 22:44:53 GMT, Marc Culler <[email protected]> > >> >> wrote: > >> >> > >> >>> I am seeing a build failure for gap_packages-4.13.1 on macOS 15 > with M1 > >> >>> CPU. A header file seems to be missing: > >> >>> > >> >>> [spkg-install] In file included from src/bipart.cpp:38: > >> >>> [spkg-install] libsemigroups/include/libsemigroups/report.hpp:42:10: > >> >>> fatal error: 'textflowcpp/TextFlow.hpp' file not found > >> >>> [spkg-install] #include "textflowcpp/TextFlow.hpp" > >> >>> [spkg-install] ^~~~~~~~~~~~~~~~~~~~~~~~~~ > >> >>> [spkg-install] 1 error generated. > >> >>> [spkg-install] make[5]: *** [gen/src/bipart.o] Error 1 > >> >>> > >> >>> (I don't seem to have the option of attaching files on this list, > so the > >> >>> full log file is not attached.) > >> >>> > >> >>> - Marc > >> >>> > >> >> > >> > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion visit > https://groups.google.com/d/msgid/sage-release/2cc864ad-0150-4225-b94c-853a766c660cn%40googlegroups.com > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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