Re-reading my messages, I noticed that I mistyped pkg-config --cflags libsemigroup (which gives the error I reported) for pkg-config --cflags libsemigroups (which works silently). But even after running the *correct* pkg-config command, gap_packages-4.13.1 still fails to build, with a different error message : [spkg-install] g++ -std=gnu++11 -pthread -g -O2 -fPIC -MQ gen/src/cong.o -MMD -MP -MF gen/src/cong.d -std=gnu++14 -O3 -mavx -flax-vector-conversions -Igapbind14/include/ -DHPCOMBI_CONSTEXPR_FUN_ARGS -DFMT_HEADER_ONLY -DNDEBUG -g -O2 -o gen/src/cong.o -I/usr/local/sage-10/local/include/gap -I/usr/local/sage-10/local/include -DUSE_GASMAN=1 -c src/cong.cpp [spkg-install] In file included from /usr/local/sage-10/local/include/libsemigroups/knuth-bendix.hpp:34, [spkg-install] from /usr/local/sage-10/local/include/libsemigroups/cong.hpp:30, [spkg-install] from src/to_cpp.hpp:54, [spkg-install] from src/cong.cpp:29: [spkg-install] /usr/local/sage-10/local/include/libsemigroups/digraph.hpp:58:10: fatal error: Eigen/Core: No such file or directory [spkg-install] 58 | #include <Eigen/Core> [spkg-install] | ^~~~~~~~~~~~ [spkg-install] compilation terminated. [spkg-install] make[5]: *** [Makefile.gappkg:130: gen/src/cong.o] Error 1 [spkg-install] ************************************************************************************************************************ [spkg-install] Error building gap_packages-4.13.1 [spkg-install] ************************************************************************************************************************ ************************************************************************ Error installing package gap_packages-4.13.1 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /usr/local/sage-10/logs/pkgs/gap_packages-4.13.1.log and /usr/local/sage-10/config.log
Logs follow. Le lundi 28 octobre 2024 à 15:04:39 UTC+1, Emmanuel Charpentier a écrit : > Any suggestion on the ways to solve the present problem ? The only one I > can think of would be to revert to 10.5.beta7 (by detaching head), `make > build` then `make`. > > Advice ? > > Le lundi 28 octobre 2024 à 14:33:39 UTC+1, Dima Pasechnik a écrit : > >> The upgrade to GAP 4.13.1 simply missed the necessary libsemigroups bump. >> - they should be done in lockstep. >> >> What happens, I think, is that GAP semigroup package tries instead to >> build its own libsemigroup, but it does not work. >> >> >> On Mon, Oct 28, 2024 at 10:11 AM Emmanuel Charpentier >> <[email protected]> wrote: >> > >> > And, BTW : >> > >> > (sage-buildsh) charpent@SAP5342949:sage-10$ ls $PKG_CONFIG_PATH >> Singular.pc cblas.pc fflas-ffpack.pc gsl.pc libpolys.pc msolve.pc bdw-gc.pc >> eclib.pc fplll.pc lapack.pc libsemigroups.pc omalloc.pc blas.pc factory.pc >> givaro.pc libgap.pc linbox.pc singular_resources.pc >> > >> > HTH, >> > >> > Le lundi 28 octobre 2024 à 11:07:17 UTC+1, Emmanuel Charpentier a écrit >> : >> >> >> >> No such luck (see previous post for config) : >> >> >> >> Le lundi 28 octobre 2024 à 09:25:27 UTC+1, Dima Pasechnik a écrit : >> >> >> >> I think it is probably a Sage's spkgs' dependincies bug. (you need >> pkg-config for the packages involved). >> >> >> >> In more detail, >> >> GAP package semigroups's sources carry a vendored version of >> libsemigroups, but it should not be used. Instead its ./configure should >> find the external (to it) libsemigroups installation, and use it. >> >> >> >> The build script of gap_packages does deal with -I options for >> particular packages, it assumes that this is taken care of by the >> aforementioned ./configure - which in this case should figure out that the >> correct -I by calling >> >> >> >> pkg-config --cflags libsemigroups >> >> >> >> Can you check if it works? (invoke ./sage --buildsh >> >> and in this shell execute the call above) >> >> >> >> charpent@SAP5342949:/usr/local/sage-10$ ./sage --buildsh Starting >> subshell with Sage environment variables set. Don't forget to exit when you >> are done. Beware: * Do not do anything with other copies of Sage on your >> system. * Do not use this for installing Sage packages using "sage -i" or >> for running "make" at Sage's root directory. These should be done outside >> the Sage shell. Bypassing shell configuration files... Note: >> SAGE_ROOT=/usr/local/sage-10 (sage-buildsh) charpent@SAP5342949:sage-10$ >> pkg-config --cflags libsemigroup Package libsemigroup was not found in the >> pkg-config search path. Perhaps you should add the directory containing >> `libsemigroup.pc' to the PKG_CONFIG_PATH environment variable Package >> 'libsemigroup', required by 'virtual:world', not found >> >> >> >> However (in another window) : >> >> >> >> charpent@SAP5342949:/usr/local/sage-10$ ./sage -optional | grep -v >> ot_instal /usr/local/sage-10/src/sage/misc/package.py:118: UserWarning: >> failed to fetch the version of pkg='auditwheel_or_delocate' at >> https://pypi.org/pypi/auditwheel_or_delocate/json warnings.warn("failed >> to fetch the version of pkg={!r} at {}".format(pkg, url)) >> /usr/local/sage-10/src/sage/misc/package.py:118: UserWarning: failed to >> fetch the version of pkg='ore_algebra' at >> https://pypi.org/pypi/ore_algebra/json warnings.warn("failed to fetch >> the version of pkg={!r} at {}".format(pkg, url)) >> [package]...............................[latest version] ([version]) >> build...................................? (1.2.1) >> cypari2.................................? (2.2.0) >> dot2tex.................................2.11.3.p0 (2.11.3.p0) >> fricas..................................1.3.11 (1.3.11) >> gap_jupyter.............................0.9 (0.9) >> hatch_fancy_pypi_readme.................? (24.1.0) >> hatch_vcs...............................? (0.4.0) >> jmol....................................14.29.52 (14.29.52) >> jupyter_jsmol...........................2022.1.0 (2022.1.0) >> jupyter_kernel_gap......................? (0.9) >> jupyter_kernel_singular.................? (0.9.7) >> libsemigroups...........................2.3.2 (2.3.2) >> msolve..................................0.6.5 (0.6.5) >> pysingular..............................0.9.7 (0.9.7) >> python3_venv............................? (3.12--usr-bin-python3) >> python_dateutil.........................? (2.9.0.post0) >> sagemath................................? (0.0.0) >> sagemath_standard.......................? (10.5b8) >> singular_jupyter........................0.9.7 (0.9.7) >> >> >> >> Stuck… >> >> >> >> >> >> In fact, pkg-config should be a dependency of libsemigroups (pkgconf >> should be in build/pkgs/libsemigroups/dependencies), and of gap_packages >> (pkgconf should be in build/pkgs/gap_packages/dependencies). >> >> >> >> But it is not -- so this is a Sage bug, potentially being the reason >> behind your problem. >> >> >> >> >> >> >> >> >> >> >> >> On 28 October 2024 01:49:55 GMT, Marc Culler <[email protected]> >> wrote: >> >> >I know that libsemigroups is a separate spkg. That is not the issue. >> In >> >> >fact the missing header file exists in the Sage tree, both in the >> >> >local/include directory and in the gap_packages build directory >> (which is >> >> >still there because the build failed). >> >> > >> >> >% find . -name TextFlow.hpp >> >> >./local/include/libsemigroups/textflowcpp/TextFlow.hpp >> >> >> >./local/var/tmp/sage/build/gap_packages-4.13.1/src/pkg/semigroups/libsemigroups/extern/textflowcpp/TextFlow.hpp >> > >> >> >> > >> >> >The problem is that the build script for the new gap_packages spkg is >> not >> >> >setting the options needed to make the compiler look in either of >> those >> >> >places. I would assume that a -I option is missing somewhere. Perhaps >> a >> >> >patch is needed to add that option in the appropriate place. >> >> > >> >> >Here is the compiler command that generates the error, copied from >> the log >> >> >file: >> >> > >> >> >[spkg-install] g++ -std=gnu++11 -std=gnu++11 -pthread -O2 >> >> >-mmacosx-version-min=11.0 -stdlib=libc++ -fno-common -MQ >> gen/src/bipart.o >> >> >-MMD -MP -MF gen/src/bipart.d -I./bin/include >> -I./bin/include/libsemigroups >> >> >-std=gnu++14 -O3 -Igapbind14/include/ >> >> >-Ilibsemigroups/extern/fmt-8.0.1/include -Ilibsemigroups/include >> >> >-DFMT_HEADER_ONLY -DNDEBUG -O2 -mmacosx-version-min=11.0 >> -stdlib=libc++ -o >> >> >gen/src/bipart.o >> -I/private/var/tmp/sage-10.5-current/local/include/gap >> >> >-I/private/var/tmp/sage-10.5-current/local/include -DUSE_GASMAN=1 -c >> >> >src/bipart.cpp >> >> > >> >> >It seems to be looking in libsemigroups/include but it should also be >> >> >looking in libsemigroups/include/extern. >> >> > >> >> >- Marc >> >> > >> >> >On Sun, Oct 27, 2024 at 6:26 PM Dima Pasechnik <[email protected]> >> wrote: >> >> > >> >> >> libsemigroups is a separate spkg, it is (or it should be) a pre-req >> for >> >> >> gap_packages >> >> >> >> >> >> >> >> >> On 27 October 2024 22:44:53 GMT, Marc Culler <[email protected]> >> >> >> wrote: >> >> >> >> >> >>> I am seeing a build failure for gap_packages-4.13.1 on macOS 15 >> with M1 >> >> >>> CPU. A header file seems to be missing: >> >> >>> >> >> >>> [spkg-install] In file included from src/bipart.cpp:38: >> >> >>> [spkg-install] >> libsemigroups/include/libsemigroups/report.hpp:42:10: >> >> >>> fatal error: 'textflowcpp/TextFlow.hpp' file not found >> >> >>> [spkg-install] #include "textflowcpp/TextFlow.hpp" >> >> >>> [spkg-install] ^~~~~~~~~~~~~~~~~~~~~~~~~~ >> >> >>> [spkg-install] 1 error generated. >> >> >>> [spkg-install] make[5]: *** [gen/src/bipart.o] Error 1 >> >> >>> >> >> >>> (I don't seem to have the option of attaching files on this list, >> so the >> >> >>> full log file is not attached.) >> >> >>> >> >> >>> - Marc >> >> >>> >> >> >> >> >> > >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-release" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to [email protected]. >> > To view this discussion visit >> https://groups.google.com/d/msgid/sage-release/2cc864ad-0150-4225-b94c-853a766c660cn%40googlegroups.com. >> >> >> > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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