Well, I got myself in trouble again:
I wanted to consolidate my installation of R
to avoid maintaining two versions with two sets of libraries:
I took a current version of R (2.8.0 Patched (2008-11-24 r47019)
and rpy-1.0.3, patched them to match the patches for 2.6 in the spkg,
compiled and installed. Seems to work.
The problem has to do with inconsistent libraries:
I am using Fedora 10, which has
g++ (GCC) 4.3.2 20081105 (Red Hat 4.3.2-7).
1) A problem I would ignore:
In the sage environment, firefox fails due
to inconsistent libraries (in fact, the pb is with sqlite3),
resulting in bookmarks getting lost
and the page forward/backward keys
becoming inoperable.
The R command 'help.start()' therefore fails altogether.
2) the problem I do want to fix:
from R, the command
install.packages('rggobi')
fails with
Gtk-Message: Failed to load module "gnomebreakpad"
because it attempts to link two inconsistent libraries:
sage-3.2.2/local/lib/gcc-lib/i686-pc-linux-gnu/4.0.3/
libgcc_s.so.1
/usr/lib/libstdc++.so.6
I would love to hear ideas of how to get around this one?
Maybe get a copy of 4.0.3/libstdc++.so?
thank you all, sage has proved extremely useful!
-gerhard
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