Am not able to build sage from the source code on my xubuntu. I am getting an error in build of r-3.6.2.p0 I have attached the log files below
-- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-support/d166a28c-1bac-4928-87f5-eadada4531f0%40googlegroups.com.
Found local metadata for r-3.6.2.p0 Attempting to download package R-3.6.2.tar.gz from mirrors http://mirrors.mit.edu/sage/spkg/upstream/r/R-3.6.2.tar.gz [......................................................................] r-3.6.2.p0 ==================================================== Setting up build directory for r-3.6.2.p0 Finished extraction Applying patches from ../patches... Applying ../patches/autoconf_verb_dash.patch patching file configure Hunk #1 succeeded at 24966 with fuzz 2 (offset 129 lines). Hunk #2 succeeded at 25323 (offset 130 lines). Applying ../patches/cygwin_build_support.patch patching file configure Hunk #1 succeeded at 27637 (offset -86 lines). Hunk #2 succeeded at 27879 (offset -117 lines). Hunk #3 succeeded at 27892 (offset -117 lines). Hunk #4 succeeded at 27905 (offset -117 lines). patching file configure.ac Hunk #1 succeeded at 1280 (offset -14 lines). Hunk #2 succeeded at 1537 (offset -14 lines). Hunk #3 succeeded at 1549 (offset -14 lines). Hunk #4 succeeded at 1561 (offset -14 lines). patching file src/library/tools/R/install.R Hunk #1 succeeded at 1215 (offset 374 lines). Applying ../patches/hardcoded_dirs.patch patching file src/scripts/Makefile.in Hunk #1 succeeded at 87 (offset -2 lines). patching file src/scripts/R.sh.in Applying ../patches/libcurl_https_support.patch patching file configure Hunk #1 succeeded at 42943 (offset 1874 lines). Hunk #2 succeeded at 42952 (offset 1874 lines). patching file m4/R.m4 Hunk #1 succeeded at 4181 (offset -24 lines). Applying ../patches/link_all_shared_libs.patch patching file etc/Makeconf.in Hunk #1 succeeded at 159 with fuzz 2 (offset 9 lines). Applying ../patches/m4_macro_bug.patch patching file configure Hunk #1 succeeded at 42543 (offset 1744 lines). Hunk #2 succeeded at 42587 with fuzz 2 (offset 1744 lines). patching file m4/R.m4 Hunk #1 succeeded at 3100 (offset -90 lines). Hunk #2 succeeded at 3122 with fuzz 2 (offset -90 lines). Applying ../patches/rcmd_exec.patch patching file src/scripts/Rcmd.in **************************************************** Host system: Linux archit-Inspiron-5567 4.15.0-88-generic #88-Ubuntu SMP Tue Feb 11 20:11:34 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1) **************************************************** Package 'r' is currently not installed Uninstalling 'r' with legacy uninstaller R_CONFIGURE_BLAS=--with-blas=-L/home/archit/sage/local/lib -lopenblas R_CONFIGURE_LAPACK=--with-lapack=-L/home/archit/sage/local/lib -lopenblas Configuring r-3.6.2.p0 configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... no configure: WARNING: you cannot build info or HTML versions of the R manuals checking for texi2dvi... no checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... missing configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip checking for bzip2... /home/archit/sage/local/bin/bzip2 checking for firefox... /usr/bin/firefox using default browser ... /usr/bin/firefox checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... missing checking for working autoconf... missing checking for working autoheader... missing checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /home/archit/sage/local/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking whether g++ -std=gnu++11 -g -O2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ -std=gnu++11 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking whether g++ -std=gnu++11 can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking whether the g++ -std=gnu++11 linker (ld -m elf_x86_64) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fPIC -DPIC checking if g++ -std=gnu++11 PIC flag -fPIC -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... yes checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_callback_sigcleanup exists and is declared... no checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -### checking for Fortran libraries of gfortran... -L/home/archit/sage/local/lib -L/home/archit/sage/local/lib/../lib -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0 -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -### checking for C libraries of gcc... -L/home/archit/sage/local/lib -L/home/archit/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ -std=gnu++11 accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... checking for xmkmf... no checking whether g++ -std=gnu++11 supports C++98 features with -std=gnu++98... yes checking whether g++ -std=gnu++11 supports C++11 features with -std=gnu++11... yes checking whether g++ -std=gnu++11 supports C++14 features with -std=gnu++14... yes checking whether g++ -std=gnu++11 supports C++17 features with -std=gnu++17... yes checking for g++ -std=gnu++11 -std=gnu++11 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -L/home/archit/sage/local/lib -lopenblas ... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for X... disabled using X11 ... no checking whether pkg-config knows about cairo and pango... no checking whether pkg-config knows about cairo... no checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... no checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... no checking for tcl.h... no checking for BSD networking... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes checking if PCRE version >= 8.32... yes checking whether PCRE support suffices... yes checking for pcre2-config... no checking for curl-config... /home/archit/sage/local/bin/curl-config checking libcurl version ... 7.62.0 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.22.0... yes checking if jpeglib version >= 6b... no checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for lpr... lpr checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... yes checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /home/archit/sage/local C compiler: gcc -g -O2 Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 Default C++ compiler: g++ -std=gnu++11 -std=gnu++11 -g -O2 C++98 compiler: g++ -std=gnu++11 -std=gnu++98 -g -O2 C++11 compiler: g++ -std=gnu++11 -std=gnu++11 -g -O2 C++14 compiler: g++ -std=gnu++11 -std=gnu++14 -g -O2 C++17 compiler: g++ -std=gnu++11 -std=gnu++17 -g -O2 Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 Obj-C compiler: Interfaces supported: External libraries: readline, BLAS(OpenBLAS), LAPACK(generic), curl Additional capabilities: PNG, NLS Options enabled: shared R library, R profiling Capabilities skipped: JPEG, TIFF, cairo, ICU Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build info or HTML versions of the R manuals configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally Building r-3.6.2.p0 make[4]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/m4' make[5]: Nothing to be done for 'R'. make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/m4' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/tools' make[5]: Nothing to be done for 'R'. make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/tools' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/html' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/html' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/manual' make[6]: Nothing to be done for 'R'. make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/manual' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/etc' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/etc' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/share' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/share' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' creating src/scripts/R.fe make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' mkdir -p -- ../../bin make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include' mkdir -p -- ../../include make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include/R_ext' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra' make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[8]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[8]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[8]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[8]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c integrate.c -o integrate.o In file included from ../../src/include/R_ext/Applic.h:41:0, from integrate.c:33: ../../src/include/R_ext/BLAS.h:103:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:110:35: error: expected declaration specifiers or '...' before ')' token double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:117:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:124:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:132:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:139:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:139:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:139:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:145:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:145:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:145:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:151:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:151:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:151:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:158:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:158:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:158:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:165:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:165:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:165:20: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:172:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:172:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:172:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:183:40: error: expected declaration specifiers or '...' before ')' token double *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:187:59: error: expected declaration specifiers or '...' before ')' token const double *x, const int *incx, double *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:194:34: error: expected declaration specifiers or '...' before ')' token double *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:200:53: error: expected declaration specifiers or '...' before ')' token const double *y, const int *incy, double *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:212:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:212:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:21: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:221:26: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:21: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:229:26: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:238:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:238:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:246:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:246:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:256:10: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:256:15: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:304:22: error: expected declaration specifiers or '...' before ')' token int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:311:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:311:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:316:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:329:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:335:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:335:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:340:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:344:26: error: expected declaration specifiers or '...' before ')' token const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:348:57: error: expected declaration specifiers or '...' before ')' token const int *incy, Rcomplex *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:354:14: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:354:19: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:359:28: note: in expansion of macro 'FCLEN' const int *ldc FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:359:33: error: expected declaration specifiers or '...' before ')' token const int *ldc FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:364:12: error: expected declaration specifiers or '...' before ')' token FCLEN); ^ ../../src/include/R_ext/BLAS.h:368:11: error: expected declaration specifiers or '...' before ')' token FCLEN); ^ ../../src/include/R_ext/BLAS.h:372:42: error: expected declaration specifiers or '...' before ')' token const int *incy, Rcomplex *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:387:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:387:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:392:14: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:392:19: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:397:28: note: in expansion of macro 'FCLEN' const int *ldc FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:397:33: error: expected declaration specifiers or '...' before ')' token const int *ldc FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:402:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:402:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:402:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:407:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:407:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:407:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:411:29: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:411:35: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:411:40: error: expected declaration specifiers or '...' before ')' token const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:415:29: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:415:35: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:415:40: error: expected declaration specifiers or '...' before ')' token const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:25: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:421:30: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:426:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:426:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:426:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:25: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:431:30: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:436:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:436:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:436:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../Makeconf:124: recipe for target 'integrate.o' failed make[7]: *** [integrate.o] Error 1 make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' Makefile:47: recipe for target 'R' failed make[6]: *** [R] Error 2 make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' Makefile:28: recipe for target 'R' failed make[5]: *** [R] Error 1 make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src' Makefile:60: recipe for target 'R' failed make[4]: *** [R] Error 1 make[4]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src' ******************************************************************************** Error building r-3.6.2.p0 ******************************************************************************** real 0m27.965s user 0m18.522s sys 0m5.776s ************************************************************************ Error installing package r-3.6.2.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /home/archit/sage/logs/pkgs/r-3.6.2.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0' && '/home/archit/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for r-3.6.2.p0 Using cached file /home/archit/sage/upstream/R-3.6.2.tar.gz r-3.6.2.p0 ==================================================== Setting up build directory for r-3.6.2.p0 Finished extraction Applying patches from ../patches... Applying ../patches/autoconf_verb_dash.patch patching file configure Hunk #1 succeeded at 24966 with fuzz 2 (offset 129 lines). Hunk #2 succeeded at 25323 (offset 130 lines). Applying ../patches/cygwin_build_support.patch patching file configure Hunk #1 succeeded at 27637 (offset -86 lines). Hunk #2 succeeded at 27879 (offset -117 lines). Hunk #3 succeeded at 27892 (offset -117 lines). Hunk #4 succeeded at 27905 (offset -117 lines). patching file configure.ac Hunk #1 succeeded at 1280 (offset -14 lines). Hunk #2 succeeded at 1537 (offset -14 lines). Hunk #3 succeeded at 1549 (offset -14 lines). Hunk #4 succeeded at 1561 (offset -14 lines). patching file src/library/tools/R/install.R Hunk #1 succeeded at 1215 (offset 374 lines). Applying ../patches/hardcoded_dirs.patch patching file src/scripts/Makefile.in Hunk #1 succeeded at 87 (offset -2 lines). patching file src/scripts/R.sh.in Applying ../patches/libcurl_https_support.patch patching file configure Hunk #1 succeeded at 42943 (offset 1874 lines). Hunk #2 succeeded at 42952 (offset 1874 lines). patching file m4/R.m4 Hunk #1 succeeded at 4181 (offset -24 lines). Applying ../patches/link_all_shared_libs.patch patching file etc/Makeconf.in Hunk #1 succeeded at 159 with fuzz 2 (offset 9 lines). Applying ../patches/m4_macro_bug.patch patching file configure Hunk #1 succeeded at 42543 (offset 1744 lines). Hunk #2 succeeded at 42587 with fuzz 2 (offset 1744 lines). patching file m4/R.m4 Hunk #1 succeeded at 3100 (offset -90 lines). Hunk #2 succeeded at 3122 with fuzz 2 (offset -90 lines). Applying ../patches/rcmd_exec.patch patching file src/scripts/Rcmd.in **************************************************** Host system: Linux archit-Inspiron-5567 4.15.0-88-generic #88-Ubuntu SMP Tue Feb 11 20:11:34 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/7/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 7.4.0-1ubuntu1~18.04.1' --with-bugurl=file:///usr/share/doc/gcc-7/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-7 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 7.4.0 (Ubuntu 7.4.0-1ubuntu1~18.04.1) **************************************************** Package 'r' is currently not installed Uninstalling 'r' with legacy uninstaller R_CONFIGURE_BLAS=--with-blas=-L/home/archit/sage/local/lib -lopenblas R_CONFIGURE_LAPACK=--with-lapack=-L/home/archit/sage/local/lib -lopenblas Configuring r-3.6.2.p0 configure: WARNING: unrecognized options: --disable-dependency-tracking checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... no checking for gnutar... no checking for tar... /bin/tar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for texi2any... no configure: WARNING: you cannot build info or HTML versions of the R manuals checking for texi2dvi... no checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... missing configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /bin/gzip checking for bzip2... /home/archit/sage/local/bin/bzip2 checking for firefox... /usr/bin/firefox using default browser ... /usr/bin/firefox checking for acroread... no checking for acroread4... no checking for xdg-open... /usr/bin/xdg-open checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... no checking for byacc... no checking for yacc... no checking for notangle... false checking for realpath... /usr/bin/realpath checking for pkg-config... /home/archit/sage/local/bin/pkg-config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... gcc -E looking for a modern Fortran compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ -std=gnu++11 accepts -g... yes checking whether g++ -std=gnu++11 -g -O2 can compile C++ code... yes checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking whether __attribute__((visibility())) is supported... yes checking whether gcc accepts -fvisibility... yes checking whether g++ -std=gnu++11 accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for gcc... gcc checking whether we are using the GNU Objective C compiler... no checking whether gcc accepts -g... no checking whether g++ -std=gnu++11 can compile ObjC++... no checking whether can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... gawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -std=gnu++11 -E checking for ld used by g++ -std=gnu++11... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking whether the g++ -std=gnu++11 linker (ld -m elf_x86_64) supports shared libraries... yes checking for g++ -std=gnu++11 option to produce PIC... -fPIC -DPIC checking if g++ -std=gnu++11 PIC flag -fPIC -DPIC works... yes checking if g++ -std=gnu++11 static flag -static works... yes checking if g++ -std=gnu++11 supports -c -o file.o... yes checking if g++ -std=gnu++11 supports -c -o file.o... (cached) yes checking whether the g++ -std=gnu++11 linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking for tilde_expand_word... yes checking whether rl_callback_sigcleanup exists and is declared... no checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of double... 8 checking size of size_t... 8 checking for C stack direction... down checking size of long double... 16 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether gcc supports -c -o FILE.lo... yes checking for gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -### checking for Fortran libraries of gfortran... -L/home/archit/sage/local/lib -L/home/archit/sage/local/lib/../lib -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0 -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/home/archit/sage/local/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from gcc... -### checking for C libraries of gcc... -L/home/archit/sage/local/lib -L/home/archit/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7 -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/7/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/7/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and gcc agree on int and double... yes checking whether gfortran and gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether g++ -std=gnu++11 accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... no checking if need -fno-optimize-sibling-calls for gfortran... yes checking for type of 'hidden' Fortran character lengths... checking for xmkmf... no checking whether g++ -std=gnu++11 supports C++98 features with -std=gnu++98... yes checking whether g++ -std=gnu++11 supports C++11 features with -std=gnu++11... yes checking whether g++ -std=gnu++11 supports C++14 features with -std=gnu++14... yes checking whether g++ -std=gnu++11 supports C++17 features with -std=gnu++17... yes checking for g++ -std=gnu++11 -std=gnu++11 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_ in -L/home/archit/sage/local/lib -lopenblas ... yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... yes checking for dpstrf_... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... yes checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... no checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... yes checking for X... disabled using X11 ... no checking whether pkg-config knows about cairo and pango... no checking whether pkg-config knows about cairo... no checking for tclConfig.sh... no checking for tclConfig.sh in library (sub)directories... no checking for tkConfig.sh... no checking for tkConfig.sh in library (sub)directories... no checking for tcl.h... no checking for BSD networking... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes checking if PCRE version >= 8.32... yes checking whether PCRE support suffices... yes checking for pcre2-config... no checking for curl-config... /home/archit/sage/local/bin/curl-config checking libcurl version ... 7.62.0 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.22.0... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for visible __lib_stack_end... yes checking for lpr... lpr checking for paperconf... /usr/bin/paperconf checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether we are using the GNU C Library 2 or newer... yes checking for ranlib... (cached) ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... yes checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... ld -m elf_x86_64 checking if the linker (ld -m elf_x86_64) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... yes checking argz.h presence... yes checking for argz.h... yes checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) yes checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... yes checking for argz_stringify... yes checking for argz_next... yes checking for __fsetlocking... yes checking whether feof_unlocked is declared... yes checking whether fgets_unlocked is declared... yes checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... yes checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... yes checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/bash configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --disable-dependency-tracking R is now configured for x86_64-pc-linux-gnu Source directory: . Installation directory: /home/archit/sage/local C compiler: gcc -g -O2 Fortran fixed-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 Default C++ compiler: g++ -std=gnu++11 -std=gnu++11 -g -O2 C++98 compiler: g++ -std=gnu++11 -std=gnu++98 -g -O2 C++11 compiler: g++ -std=gnu++11 -std=gnu++11 -g -O2 C++14 compiler: g++ -std=gnu++11 -std=gnu++14 -g -O2 C++17 compiler: g++ -std=gnu++11 -std=gnu++17 -g -O2 Fortran free-form compiler: gfortran -fno-optimize-sibling-calls -g -O2 Obj-C compiler: Interfaces supported: External libraries: readline, BLAS(OpenBLAS), LAPACK(generic), curl Additional capabilities: PNG, JPEG, NLS, ICU Options enabled: shared R library, R profiling Capabilities skipped: TIFF, cairo Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build info or HTML versions of the R manuals configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally Building r-3.6.2.p0 make[4]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/m4' make[5]: Nothing to be done for 'R'. make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/m4' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/tools' make[5]: Nothing to be done for 'R'. make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/tools' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/html' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/html' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/manual' make[6]: Nothing to be done for 'R'. make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc/manual' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/doc' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/etc' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/etc' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/share' make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/share' make[5]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' creating src/scripts/R.fe make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' mkdir -p -- ../../bin make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/scripts' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include' mkdir -p -- ../../include make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include/R_ext' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/include' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra' make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[8]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c make[8]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[8]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regcomp.c -o regcomp.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regerror.c -o regerror.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c regexec.c -o regexec.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-ast.c -o tre-ast.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-compile.c -o tre-compile.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-mem.c -o tre-mem.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-parse.c -o tre-parse.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c tre-stack.c -o tre-stack.o gcc -I. -I. -I../../../src/include -I../../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -fvisibility=hidden -c xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[8]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra/tre' make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/extra' make[6]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' making integrate.d from integrate.c making interv.d from interv.c making maxcol.d from maxcol.c making optim.d from optim.c making pretty.d from pretty.c making uncmin.d from uncmin.c make[7]: Entering directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c integrate.c -o integrate.o In file included from ../../src/include/R_ext/Applic.h:41:0, from integrate.c:33: ../../src/include/R_ext/BLAS.h:103:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:110:35: error: expected declaration specifiers or '...' before ')' token double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:117:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:124:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:132:55: error: expected declaration specifiers or '...' before ')' token const double *beta, double *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:139:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:139:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:139:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:145:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:145:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:145:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:151:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:151:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:151:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:158:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:158:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:158:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:165:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:165:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:165:20: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:172:36: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:172:42: note: in expansion of macro 'FCLEN' double *x, const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:172:47: error: expected declaration specifiers or '...' before ')' token double *x, const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:183:40: error: expected declaration specifiers or '...' before ')' token double *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:187:59: error: expected declaration specifiers or '...' before ')' token const double *x, const int *incx, double *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:194:34: error: expected declaration specifiers or '...' before ')' token double *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:200:53: error: expected declaration specifiers or '...' before ')' token const double *y, const int *incy, double *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:212:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:212:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:221:21: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:221:26: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:15: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:229:21: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:229:26: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:238:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:238:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:246:9: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:246:14: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:256:10: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:256:15: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:304:22: error: expected declaration specifiers or '...' before ')' token int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:311:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:311:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:316:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:329:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:335:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:335:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:340:41: error: expected declaration specifiers or '...' before ')' token Rcomplex *y, const int *incy FCLEN); ^ ../../src/include/R_ext/BLAS.h:344:26: error: expected declaration specifiers or '...' before ')' token const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:348:57: error: expected declaration specifiers or '...' before ')' token const int *incy, Rcomplex *a, const int *lda FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:354:14: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:354:19: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:359:28: note: in expansion of macro 'FCLEN' const int *ldc FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:359:33: error: expected declaration specifiers or '...' before ')' token const int *ldc FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:364:12: error: expected declaration specifiers or '...' before ')' token FCLEN); ^ ../../src/include/R_ext/BLAS.h:368:11: error: expected declaration specifiers or '...' before ')' token FCLEN); ^ ../../src/include/R_ext/BLAS.h:372:42: error: expected declaration specifiers or '...' before ')' token const int *incy, Rcomplex *ap FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:387:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:387:18: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:392:14: note: in expansion of macro 'FCLEN' FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:392:19: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:397:28: note: in expansion of macro 'FCLEN' const int *ldc FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:397:33: error: expected declaration specifiers or '...' before ')' token const int *ldc FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:402:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:402:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:402:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:407:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:407:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:407:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:411:29: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:411:35: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:411:40: error: expected declaration specifiers or '...' before ')' token const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:415:29: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:415:35: note: in expansion of macro 'FCLEN' const int *incx FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:415:40: error: expected declaration specifiers or '...' before ')' token const int *incx FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:421:25: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:421:30: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:426:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:426:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:426:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:431:25: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:431:30: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN FCLEN); ^ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:436:13: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:43:16: error: expected declaration specifiers or '...' before ',' token # define FCLEN ,FC_LEN_T ^ ../../src/include/R_ext/BLAS.h:436:19: note: in expansion of macro 'FCLEN' FCLEN FCLEN FCLEN); ^~~~~ ../../src/include/R_ext/BLAS.h:436:24: error: expected declaration specifiers or '...' before ')' token FCLEN FCLEN FCLEN); ^ ../../Makeconf:124: recipe for target 'integrate.o' failed make[7]: *** [integrate.o] Error 1 make[7]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' Makefile:47: recipe for target 'R' failed make[6]: *** [R] Error 2 make[6]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src/appl' Makefile:28: recipe for target 'R' failed make[5]: *** [R] Error 1 make[5]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src/src' Makefile:60: recipe for target 'R' failed make[4]: *** [R] Error 1 make[4]: Leaving directory '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0/src' ******************************************************************************** Error building r-3.6.2.p0 ******************************************************************************** real 0m24.370s user 0m18.832s sys 0m5.651s ************************************************************************ Error installing package r-3.6.2.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /home/archit/sage/logs/pkgs/r-3.6.2.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/archit/sage/local/var/tmp/sage/build/r-3.6.2.p0' && '/home/archit/sage/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
