#4576: biopython optional package upgrade to 1.49beta
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Reporter: mhampton | Owner: mabshoff
Type: enhancement | Status: new
Priority: minor | Milestone: sage-3.2.1
Component: optional packages | Resolution:
Keywords: biopython, optional packages |
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Comment (by was):
The tarball has a massive amount of meta-crap:
{{{
...
biopython-1.49b/biopython-1.49b/Tests/MEME/._mast.dna.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/mast.dna.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/._mast.protein.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/mast.protein.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/._mast.protein.tcm.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/mast.protein.tcm.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/._meme.dna.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/meme.dna.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/._meme.protein.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/meme.protein.oops.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/._meme.protein.tcm.txt
biopython-1.49b/biopython-1.49b/Tests/MEME/meme.protein.tcm.txt
}}}
Note all the ._ files. OS X sticks them there. Can you make the
thing again using sage.math (or any other linux box)?
The install works fine on sage.math:
{{{
real 0m21.822s
user 0m17.317s
sys 0m2.876s
Successfully installed biopython-1.49b
}}}
How do I test that it works? Can you give a few sample commands or
explain how to run the biopython test suite?
William
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/4576#comment:2>
Sage <http://sagemath.org/>
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