#10508: Update ATLAS to stable version 3.10
-----------------------------------------------------------------------------------------+
Reporter: vbraun
| Owner: tbd
Type: enhancement
| Status: needs_work
Priority: major
| Milestone: sage-5.9
Component: packages
| Resolution:
Keywords: ATLAS
| Work issues:
Report Upstream: Reported upstream. No feedback yet.
| Reviewers: Benjamin Jones, Karl-Dieter Crisman, Dmitrii
Pasechnik, Georg Weber, François Bissey, John Palmieri
Authors: Volker Braun, Jeroen Demeyer
| Merged in:
Dependencies: #13160, #13395, #13392, #13416, #12994, #9906, #12883,
#13123, #13415 | Stopgaps:
-----------------------------------------------------------------------------------------+
Comment (by kcrisman):
Cygwin update, completely different problem from JP, though also Win 7.
{{{
make[6]: Entering directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/tune/blas/gemv'
/usr/bin/gcc -c -DL2SIZE=4194304
-I/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/include
-I/cygdrive/c/cygwin//home/sagetese-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//include
-I/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//de/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle
-DATL_OS_WinNT -DATL_ARCH_x86x87 -DATL_CPUMHZ=2893 -DGCCWIN -DUseClock
-DATL_3DNow -DATL_GAS_x8632 -m32 -DATL_FUPACK -DATL_NCPU=4 -O -fomit-
frame-pointer -fPIC -m32 -mstackrealign -o mvtksearch.o
/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0/ATLAld/../src//tune/blas/gemv/mvtksearch.c
/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//tune/blas/gemv/mvtksearch.c:1:0: warning: -fPIC
ignored for target (ade is position independent)
/usr/bin/gcc -DL2SIZE=4194304
-I/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/include
-I/cygdrive/c/cygwin//home/sagetest/s.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//include
-I/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//inccontrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle
-DATL_OS_WinNT -DATL_ARCH_x86x87 -DATL_CPUMHZ=2893 -DGCCWIN -DUseClock
-DATL_3DNow -DATL_GAS_x8632 -m32 -DATL_FULL_K -DATL_NCPU=4 -O -fomit-
frame-pointer -fPIC -m32 -mstackrealign -o xmvtksearch mvtksearch.o
./xmvtksearch -p d
assertion "kpB" failed: file
"/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/../src//tune/blas/gemv/mvtksearch.c", line 1239ction:
TuneBestPF
Makefile:514: recipe for target `res/dMVTK.sum' failed
make[6]: *** [res/dMVTK.sum] Aborted (core dumped)
make[6]: Leaving directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/tune/blas/gemv'
Makefile:321: recipe for target
`/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/tune/blas/gemv/res/dMVTK.sum' failed
make[5]: ***
[/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build/tune/blas/gemv/res/dMVTK.sum] Error 2
make[5]: Leaving directory
`/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0/ATLAS-build/bin'
ERROR 949 DURING MVTTUNE!!. CHECK INSTALL_LOG/dMVTTUNE.LOG FOR DETAILS.
make[5]: Entering directory
`/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0/ATLAS-build/bin'
cd
/cygdrive/c/cygwin//home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build ; make -j1 error_report
make[6]: Entering directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build'
make -j1 -f Make.top error_report
make[7]: Entering directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build'
uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
/usr/bin/gcc -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
Using built-in specs.
COLLECT_GCC=/usr/bin/gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.5.3/lto-wrapper.exe
Target: i686-pc-cygwin
Configured with:
/gnu/gcc/releases/respins/4.5.3-3/gcc4-4.5.3-3/src/gcc-4.5.3/configure
--srcdir=/gnu/gcc/releases/respins/4.5.3-3/gcc4-4.5.3-3/src/gcc-4.5.3
--prefir --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin
--libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var
--sysconfdir=/etc --datarootdir=/usr/sharecdir=/usr/share/doc/gcc4 -C
--datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v
--with-gmp=/usr --with-mpfr=/usr --enable-bootstrap --enable-ve-specific-
runtime-libs --libexecdir=/usr/lib --enable-static --enable-shared
--enable-shared-libgcc --disable-__cxa_atexit --with-gnu-ld --with-gnu-as
--with-dwarf2 able-sjlj-exceptions --enable-
languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite
--enable-lto --enable-java-awt=gtk --disable-symvers --enable-
libjaprogram-suffix=-4 --enable-libgomp --enable-libssp --enable-libada
--enable-threads=posix --with-arch=i686 --with-tune=generic --enable-
libgcj-sublibs CC=gcc-4 CXX=gCC_FOR_TARGET=gcc-4 CXX_FOR_TARGET=g++-4
GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind --with-ecj-
jar=/usr/share/java/ecj.jar
Thread model: posix
gcc version 4.5.3 (GCC)
/usr/bin/gcc -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
gcc: '-V' option must have argument
Make.top:4: recipe for target `error_report' failed
make[7]: [error_report] Error 1 (ignored)
/usr/bin/gcc --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
tar cf error_x86x87323DNow.tar Make.inc bin/INSTALL_LOG/*
bzip2 error_x86x87323DNow.tar
make[7]: Leaving directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build'
make[6]: Leaving directory
`/cygdrive/c/cygwin/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0
/ATLAS-build'
make[5]: Leaving directory
`/home/sagetest/sage-5.9.beta0/spkg/build/atlas-3.10.1.p0/ATLAS-build/bin'
Error report error_<ARCH>.tgz has been created in your top-level ATLAS
directory. Be sure to include this file in any help request.
cat: ../../CONFIG/error.txt: No such file or directory
cat: ../../CONFIG/error.txt: No such file or directory
}}}
Then there was some other stuff that presumably shouldn't have kept going
but did, but soon after that it realized it didn't have some of the stuff
and failed.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/10508#comment:382>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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