#10508: Update ATLAS to stable version 3.10
-------------------------------------------------------------------------------------------------+
Reporter: vbraun
| Owner: tbd
Type: enhancement
| Status: needs_work
Priority: major
| Milestone: sage-5.9
Component: packages
| Resolution:
Keywords: ATLAS
| Work issues:
Report Upstream: Reported upstream. No feedback yet.
| Reviewers: Benjamin Jones, Karl-Dieter Crisman, Dmitrii
Pasechnik, Georg Weber, François Bissey, John Palmieri
Authors: Volker Braun, Jeroen Demeyer
| Merged in:
Dependencies: #13160, #13395, #13392, #13416, #12994, #9906, #12883,
#13123, #13415, #14344 | Stopgaps:
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Comment (by kcrisman):
> Could you try running "nm libatlas.dylib|grep "DecAtomic"" on the
produced shared libraries (assuming its called libatlas.dylib on OS X)?
I don't have to; R (and a fortiori rpy2) failed for this reason.
{{{
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object
'/Users/student/Desktop/sage-5.9.beta0/spkg/build/r-2.15.2.p1/src/library/grDevices/libs/grDevices.so':
dlopen(/Users/student/Desktop/sage-5.9.beta0/spkg/build/r-2.15.2.p1/src/library/grDevices/libs/grDevices.so,
6): Symbol not found: _ATL_DecAtomicCount
Referenced from:
/Users/student/Desktop/sage-5.9.beta0/local/lib/libatlas.2.dylib
Expected in: dynamic lookup
Calls: <Anonymous> ... namespaceImport -> loadNamespace -> library.dynam
-> dyn.load
Execution halted
make[7]: *** [../../../library/graphics/R/graphics.rdb] Error 1
make[6]: *** [all] Error 2
make[5]: *** [R] Error 1
make[4]: *** [R] Error 1
make[3]: *** [R] Error 1
Error building R.
}}}
Matplotlib also didn't build because it couldn't find numpy, which doesn't
make any sense since numpy built fine, but anyway...
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/10508#comment:387>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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