#14706: Upgrade R to version 3.0.1
-----------------------------------------------------------+----------------
Reporter: charpent | Owner:
jdemeyer
Type: enhancement | Status:
new
Priority: major | Milestone:
sage-5.11
Component: packages: standard | Resolution:
Keywords: r-project spkg | Work issues:
Report Upstream: N/A | Reviewers:
Leif Leonhardy, Karl-Dieter Crisman, Jeroen Demeyer
Authors: Emmanuel Charpentier, Jean-Pierre Flori | Merged in:
Dependencies: | Stopgaps:
-----------------------------------------------------------+----------------
Changes (by jdemeyer):
* status: closed => new
* resolution: fixed =>
* merged: sage-5.11.beta1 =>
Comment:
There are some problems with upgrading on OS X:
{{{
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c text.c -o text.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c init.c -o init.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c Rmd5.c -o Rmd5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c md5.c -o md5.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c signals.c -o signals.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c install.c -o install.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c getfmts.c -o getfmts.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c http.c -o http.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c gramLatex.c -o gramLatex.o
gcc -std=gnu99 -I../../../../include -DNDEBUG -I../../../include
-I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main -fPIC
-g -O2 -c gramRd.c -o gramRd.o
gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress -o tools.so
text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o
gramLatex.o gramRd.o -L../../../../lib -lR -dylib_file
libRblas.dylib:../../../../lib/libRblas.dylib -Wl,-framework
-Wl,CoreFoundation
make[8]: `Makedeps' is up to date.
mkdir ../../../../library/tools/libs
dyld: Library not loaded: libR.dylib
Referenced from:
/Users/dehayebuildbot/build/sage/dehaye/dehaye_upgrade_5.4.1/build/sage-5.11.beta1/spkg/build/r-3.0.1.p1/src/bin/exec/R
Reason: Incompatible library version: R requires version 3.0.0 or later,
but libR.dylib provides version 2.14.0
/bin/sh: line 1: 83314 Done echo
"tools:::.install_package_description('.', '"../../../library/tools"')"
83315 Trace/BPT trap: 5 | R_DEFAULT_PACKAGES=NULL
../../../bin/R --vanilla --slave > /dev/null
make[5]: *** [all] Error 133
make[4]: *** [R] Error 1
make[3]: *** [R] Error 1
make[2]: *** [R] Error 1
Error building R.
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/14706#comment:64>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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