#18229: Upgrade R to 3.2.0
-------------------------------------+-------------------------------------
Reporter: charpent | Owner: charpent
Type: enhancement | Status: needs_work
Priority: minor | Milestone: sage-6.7
Component: packages: | Resolution:
standard | Merged in:
Keywords: r-project | Reviewers: Vincent Delecroix
Authors: Emmanuel | Work issues: Fix detection of
Charpentier | bzlib
Report Upstream: N/A | Commit:
Branch: | ab208a4e69834c786a2f0d4ff5a2626776db4d62
u/charpent/upgrade_r_to_3_1_3 | Stopgaps:
Dependencies: #18254 |
-------------------------------------+-------------------------------------
Changes (by leif):
* status: needs_review => needs_work
* work_issues: => Fix detection of bzlib
Comment:
Replying to [comment:46 fbissey]:
> Speaking of detection of `bzlib` in `R`, I have another annoyance to
signal. The test to check the version of `bzlib` in `R`'s configure script
is broken with gcc 5.1 - I noticed it in `R-3.2.0` so this is current.
You mean this? 8D
{{{
make[6]: Entering directory '/tmp/sage-build-tmp/r-3.2.0.p0/src/src/main'
gcc-5.1 -I../../src/extra/pcre -I../../src/extra
-I../../src/extra/xz/api -I. -I../../src/include -I../../src/include
-I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O2 -c Rmain.c -o
Rmain.o
gcc-5.1 -Wl,--export-dynamic -fopenmp -L../../lib
-L/data/Sage/release/devel/sage-6.7.beta3-gcc-5.1.0/local/lib/ -o R.bin
Rmain.o -lR
../../lib/libR.so: undefined reference to `BZ2_bzReadGetUnused'
../../lib/libR.so: undefined reference to `BZ2_bzRead'
../../lib/libR.so: undefined reference to `BZ2_bzBuffToBuffCompress'
../../lib/libR.so: undefined reference to `BZ2_bzBuffToBuffDecompress'
../../lib/libR.so: undefined reference to `BZ2_bzWriteClose'
../../lib/libR.so: undefined reference to `BZ2_bzWriteOpen'
../../lib/libR.so: undefined reference to `BZ2_bzReadOpen'
../../lib/libR.so: undefined reference to `BZ2_bzDecompress'
../../lib/libR.so: undefined reference to `BZ2_bzDecompressEnd'
../../lib/libR.so: undefined reference to `BZ2_bzDecompressInit'
../../lib/libR.so: undefined reference to `BZ2_bzWrite'
../../lib/libR.so: undefined reference to `BZ2_bzlibVersion'
../../lib/libR.so: undefined reference to `BZ2_bzReadClose'
collect2: error: ld returned 1 exit status
Makefile:153: recipe for target 'R.bin' failed
make[6]: *** [R.bin] Error 1
make[6]: Leaving directory '/tmp/sage-build-tmp/r-3.2.0.p0/src/src/main'
Makefile:143: recipe for target 'R' failed
make[5]: *** [R] Error 2
make[5]: Leaving directory '/tmp/sage-build-tmp/r-3.2.0.p0/src/src/main'
Makefile:28: recipe for target 'R' failed
make[4]: *** [R] Error 1
make[4]: Leaving directory '/tmp/sage-build-tmp/r-3.2.0.p0/src/src'
Makefile:59: recipe for target 'R' failed
make[3]: *** [R] Error 1
make[3]: Leaving directory '/tmp/sage-build-tmp/r-3.2.0.p0/src'
Error building R.
}}}
--
Ticket URL: <http://trac.sagemath.org/ticket/18229#comment:47>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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