#19638: upgrade rpy2 to 2.7.4
-------------------------------------+-------------------------------------
Reporter: charpent | Owner:
Type: defect | Status: new
Priority: minor | Milestone: sage-6.10
Component: packages: | Resolution:
standard | Merged in:
Keywords: r-project jupyter | Reviewers:
Authors: Emmanuel | Work issues:
Charpentier | Commit:
Report Upstream: N/A | e50329501295a1905bd4e9121b76d820bbeeaee8
Branch: | Stopgaps:
u/charpent/upgrade_rpy2_to_2_7_4 |
Dependencies: |
-------------------------------------+-------------------------------------
Changes (by {'newvalue': u'Emmanuel Charpentier', 'oldvalue': ''}):
* commit: => e50329501295a1905bd4e9121b76d820bbeeaee8
* author: => Emmanuel Charpentier
Old description:
> The current version (2.3.8) of {{{rpy2}}} packaged in Sage is too old to
> work with the current version of the Jupyter notebook
>
> Manually upgrading to 7.7.8 (via {{{sage -pip install --upgrade rpy2}}}
> seems to work. However in also upgrades {{{six}}} (to {{{1.10.0-py2.py3
> -non-any.whl}}} (???) and {{{singledispatch}}} (but seems to use the
> current (cached) version).
>
> I also get the following warning :
>
> {{{ DEPRECATION: Uninstalling a distutils installed project (rpy2) has
> been deprecated and will be removed in a future version. This is due to
> the fact that uninstalling a distutils project will only partially
> uninstall the project.}}}
>
> which I do not really understand....
New description:
The current version (2.3.8) of {{{rpy2}}} packaged in Sage is too old to
work with the current version of the Jupyter notebook
Manually upgrading to 7.7.8 (via {{{sage -pip install --upgrade rpy2}}}
seems to work. However in also upgrades {{{six}}} (to {{{1.10.0-py2.py3
-non-any.whl}}} (???) and {{{singledispatch}}} (but seems to use the
current (cached) version).
I also get the following warning :
{{{ DEPRECATION: Uninstalling a distutils installed project (rpy2) has
been deprecated and will be removed in a future version. This is due to
the fact that uninstalling a distutils project will only partially
uninstall the project.}}}
which I do not really understand....
New tarballs attached.
--
Comment:
This version does the job ({{{%R}}} and {{{%%R}}} run OK in the Jupyter
notebook).
Not yet ready for review, because :
* No documentation (yet) of this new interface
* not yet {{{ptestlong}}}'ed (and won't be until late tonight)...
Any suggestion on how to document the Jupyter interface ?
--
Ticket URL: <http://trac.sagemath.org/ticket/19638#comment:3>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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