#20525: failing optional doctests
--------------------------------------+------------------------
Reporter: vdelecroix | Owner:
Type: defect | Status: new
Priority: major | Milestone: sage-7.2
Component: packages: optional | Resolution:
Keywords: | Merged in:
Authors: | Reviewers:
Report Upstream: N/A | Work issues:
Branch: | Commit:
Dependencies: | Stopgaps:
--------------------------------------+------------------------
Changes (by jdemeyer):
* component: documentation => packages: optional
Old description:
> Since #20182 there are some failing doctests related to optional packages
>
> - `coding/linear_code.py`: related to Guava (gap package) (see
> [http://trac.sagemath.org/attachment/ticket/20525/failing_doctests-
> librae.log failing_doctests-librae.log])
> - `tests/gap_packages.py`: related to gap packages (see
> [http://trac.sagemath.org/attachment/ticket/20525/failing_doctests-
> librae.log failing_doctests-librae.log])
New description:
Since #20182 there are some failing doctests related to optional packages
{{{
sage -t --long src/sage/tests/gap_packages.py
**********************************************************************
File "src/sage/tests/gap_packages.py", line 8, in sage.tests.gap_packages
Failed example:
test_packages(pkgs, only_failures=True) # optional - gap_packages
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.gap_packages[2]>", line 1, in <module>
test_packages(pkgs, only_failures=True) # optional -
gap_packages
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/tests/gap_packages.py", line 77, in test_packages
output = libgap.eval('LoadPackage("{0}")'.format(pkg))
File "sage/libs/gap/libgap.pyx", line 431, in
sage.libs.gap.libgap.Gap.eval
(build/cythonized/sage/libs/gap/libgap.c:4183)
return make_any_gap_element(self, gap_eval(gap_command))
File "sage/libs/gap/util.pyx", line 288, in
sage.libs.gap.util.gap_eval (build/cythonized/sage/libs/gap/util.c:4947)
raise ValueError('libGAP: '+str(msg).strip())
ValueError: libGAP: Error, <opr> is not an operation
**********************************************************************
File "src/sage/tests/gap_packages.py", line 47, in
sage.tests.gap_packages.test_packages
Failed example:
test_packages(['GAPDoc'])
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.gap_packages.test_packages[1]>", line 1,
in <module>
test_packages(['GAPDoc'])
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/tests/gap_packages.py", line 77, in test_packages
output = libgap.eval('LoadPackage("{0}")'.format(pkg))
File "sage/libs/gap/libgap.pyx", line 431, in
sage.libs.gap.libgap.Gap.eval
(build/cythonized/sage/libs/gap/libgap.c:4183)
return make_any_gap_element(self, gap_eval(gap_command))
File "sage/libs/gap/util.pyx", line 288, in
sage.libs.gap.util.gap_eval (build/cythonized/sage/libs/gap/util.c:4947)
raise ValueError('libGAP: '+str(msg).strip())
ValueError: libGAP:
**********************************************************************
File "src/sage/tests/gap_packages.py", line 54, in
sage.tests.gap_packages.test_packages
Failed example:
pkgs = all_installed_packages()
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.gap_packages.test_packages[2]>", line 1,
in <module>
pkgs = all_installed_packages()
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/tests/gap_packages.py", line 109, in all_installed_packages
for path in libgap.eval('GAP_ROOT_PATHS').sage():
File "sage/libs/gap/libgap.pyx", line 431, in
sage.libs.gap.libgap.Gap.eval
(build/cythonized/sage/libs/gap/libgap.c:4183)
return make_any_gap_element(self, gap_eval(gap_command))
File "sage/libs/gap/util.pyx", line 288, in
sage.libs.gap.util.gap_eval (build/cythonized/sage/libs/gap/util.c:4947)
raise ValueError('libGAP: '+str(msg).strip())
ValueError: libGAP:
**********************************************************************
File "src/sage/tests/gap_packages.py", line 55, in
sage.tests.gap_packages.test_packages
Failed example:
test_packages(pkgs) # random output
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.gap_packages.test_packages[3]>", line 1,
in <module>
test_packages(pkgs) # random output
NameError: name 'pkgs' is not defined
**********************************************************************
File "src/sage/tests/gap_packages.py", line 105, in
sage.tests.gap_packages.all_installed_packages
Failed example:
all_installed_packages()
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.gap_packages.all_installed_packages[1]>",
line 1, in <module>
all_installed_packages()
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/tests/gap_packages.py", line 109, in all_installed_packages
for path in libgap.eval('GAP_ROOT_PATHS').sage():
File "sage/libs/gap/libgap.pyx", line 431, in
sage.libs.gap.libgap.Gap.eval
(build/cythonized/sage/libs/gap/libgap.c:4183)
return make_any_gap_element(self, gap_eval(gap_command))
File "sage/libs/gap/util.pyx", line 288, in
sage.libs.gap.util.gap_eval (build/cythonized/sage/libs/gap/util.c:4947)
raise ValueError('libGAP: '+str(msg).strip())
ValueError: libGAP:
**********************************************************************
3 items had failures:
1 of 4 in sage.tests.gap_packages
1 of 3 in sage.tests.gap_packages.all_installed_packages
3 of 5 in sage.tests.gap_packages.test_packages
[9 tests, 5 failures, 4.49 s]
sage -t --long src/sage/coding/linear_code.py
**********************************************************************
File "src/sage/coding/linear_code.py", line 3284, in
sage.coding.linear_code.AbstractLinearCode.spectrum
Failed example:
C.spectrum(algorithm="leon") # optional - gap_packages (Guava
package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.coding.linear_code.AbstractLinearCode.spectrum[8]>", line 1, in
<module>
C.spectrum(algorithm="leon") # optional - gap_packages (Guava
package)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/coding/linear_code.py", line 3328, in spectrum
lines = subprocess.check_output([os.path.join(guava_bin_dir,
'wtdist'), input])
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
566, in check_output
process = Popen(stdout=PIPE, *popenargs, **kwargs)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
710, in __init__
errread, errwrite)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
**********************************************************************
File "src/sage/coding/linear_code.py", line 3292, in
sage.coding.linear_code.AbstractLinearCode.spectrum
Failed example:
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.coding.linear_code.AbstractLinearCode.spectrum[12]>", line 1, in
<module>
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/coding/linear_code.py", line 3328, in spectrum
lines = subprocess.check_output([os.path.join(guava_bin_dir,
'wtdist'), input])
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
566, in check_output
process = Popen(stdout=PIPE, *popenargs, **kwargs)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
710, in __init__
errread, errwrite)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
**********************************************************************
File "src/sage/coding/linear_code.py", line 3296, in
sage.coding.linear_code.AbstractLinearCode.spectrum
Failed example:
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.coding.linear_code.AbstractLinearCode.spectrum[14]>", line 1, in
<module>
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/coding/linear_code.py", line 3328, in spectrum
lines = subprocess.check_output([os.path.join(guava_bin_dir,
'wtdist'), input])
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
566, in check_output
process = Popen(stdout=PIPE, *popenargs, **kwargs)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
710, in __init__
errread, errwrite)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
**********************************************************************
File "src/sage/coding/linear_code.py", line 3300, in
sage.coding.linear_code.AbstractLinearCode.spectrum
Failed example:
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
Exception raised:
Traceback (most recent call last):
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 496, in _run
self.compile_and_execute(example, compiler, test.globs)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/doctest/forker.py", line 858, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.coding.linear_code.AbstractLinearCode.spectrum[16]>", line 1, in
<module>
C.spectrum() == C.spectrum(algorithm="leon") # optional -
gap_packages (Guava package)
File "/usr/local/src/sage-git/local/lib/python2.7/site-
packages/sage/coding/linear_code.py", line 3328, in spectrum
lines = subprocess.check_output([os.path.join(guava_bin_dir,
'wtdist'), input])
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
566, in check_output
process = Popen(stdout=PIPE, *popenargs, **kwargs)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
710, in __init__
errread, errwrite)
File "/usr/local/src/sage-git/local/lib/python/subprocess.py", line
1335, in _execute_child
raise child_exception
OSError: [Errno 2] No such file or directory
**********************************************************************
1 item had failures:
4 of 18 in sage.coding.linear_code.AbstractLinearCode.spectrum
[634 tests, 4 failures, 26.04 s]
----------------------------------------------------------------------
sage -t --long src/sage/tests/gap_packages.py # 5 doctests failed
sage -t --long src/sage/coding/linear_code.py # 4 doctests failed
----------------------------------------------------------------------
}}}
--
--
Ticket URL: <http://trac.sagemath.org/ticket/20525#comment:10>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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