#7090: R test suite fails when building with SAGE_CHECK
---------------------------+------------------------------------------------
Reporter: davidloeffler | Owner: tbd
Type: defect | Status: closed
Priority: major | Milestone: sage-4.3.2
Component: build | Resolution: fixed
Keywords: R | Author:
Upstream: N/A | Reviewer:
Merged: | Work_issues:
---------------------------+------------------------------------------------
Changes (by mvngu):
* status: new => closed
* resolution: => fixed
* upstream: => N/A
Comment:
As of Sage 4.3.2.alpha1, ticket #6532 upgrades R to version 2.10.1. This
fixes the issue regarding running the R test suite:
{{{
Successfully installed r-2.10.1
Running the test suite.
make[1]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests/Examples'
Collecting examples for package ‘base’
Extracting from parsed Rd's .......................................
Running examples in package ‘base’
Collecting examples for package ‘tools’
Extracting from parsed Rd's ....
Running examples in package ‘tools’
Collecting examples for package ‘utils’
Extracting from parsed Rd's ...........
Running examples in package ‘utils’
Collecting examples for package ‘grDevices’
Extracting from parsed Rd's .....
Running examples in package ‘grDevices’
Collecting examples for package ‘graphics’
Extracting from parsed Rd's ......
Running examples in package ‘graphics’
Collecting examples for package ‘stats’
Extracting from parsed Rd's ..............................
Running examples in package ‘stats’
Collecting examples for package ‘datasets’
Extracting from parsed Rd's ........
Running examples in package ‘datasets’
Collecting examples for package ‘methods’
Extracting from parsed Rd's .......
Running examples in package ‘methods’
Collecting examples for package ‘grid’
Extracting from parsed Rd's .......
Running examples in package ‘grid’
Collecting examples for package ‘splines’
Extracting from parsed Rd's .
Running examples in package ‘splines’
Collecting examples for package ‘stats4’
Extracting from parsed Rd's .
Running examples in package ‘stats4’
Collecting examples for package ‘tcltk’
Extracting from parsed Rd's .
Running examples in package ‘tcltk’
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests/Examples'
make[2]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running strict specific tests
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running code in 'eval-etc.R' ... OK
comparing 'eval-etc.Rout' to './eval-etc.Rout.save' ... OK
running code in 'simple-true.R' ... OK
comparing 'simple-true.Rout' to './simple-true.Rout.save' ... OK
running code in 'arith-true.R' ... OK
comparing 'arith-true.Rout' to './arith-true.Rout.save' ... OK
running code in 'arith.R' ... OK
comparing 'arith.Rout' to './arith.Rout.save' ... OK
running code in 'lm-tests.R' ... OK
comparing 'lm-tests.Rout' to './lm-tests.Rout.save' ... OK
running code in 'ok-errors.R' ... OK
comparing 'ok-errors.Rout' to './ok-errors.Rout.save' ... OK
running code in 'method-dispatch.R' ... OK
comparing 'method-dispatch.Rout' to './method-dispatch.Rout.save' ... OK
running code in 'd-p-q-r-tests.R' ... OK
comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' ... OK
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running sloppy specific tests
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running code in 'complex.R' ... OK
comparing 'complex.Rout' to './complex.Rout.save' ... OK
running code in 'print-tests.R' ... OK
comparing 'print-tests.Rout' to './print-tests.Rout.save' ... OK
running code in 'lapack.R' ... OK
comparing 'lapack.Rout' to './lapack.Rout.save' ... OK
running code in 'datasets.R' ... OK
comparing 'datasets.Rout' to './datasets.Rout.save' ... OK
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running regression tests ...
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running code in 'reg-tests-1.R' ... OK
running code in 'reg-tests-2.R' ... OK
comparing 'reg-tests-2.Rout' to './reg-tests-2.Rout.save' ... OK
running code in 'reg-IO.R' ... OK
comparing 'reg-IO.Rout' to './reg-IO.Rout.save' ... OK
running code in 'reg-IO2.R' ... OK
comparing 'reg-IO2.Rout' to './reg-IO2.Rout.save' ... OK
running code in 'reg-plot.R' ... OK
comparing 'reg-plot.ps' to './reg-plot.ps.save' ... OK
running code in 'reg-S4.R' ... OK
comparing 'reg-S4.Rout' to './reg-S4.Rout.save' ... OK
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running code in 'reg-tests-3.R' ... OK
comparing 'reg-tests-3.Rout' to './reg-tests-3.Rout.save' ... OK
running tests of plotting Latin-1
expect failure or some differences if not in a Latin or UTF-8 locale
running code in 'reg-plot-latin1.R' ... OK
comparing 'reg-plot-latin1.ps' to './reg-plot-latin1.ps.save' ... OK
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running tests of Internet and socket functions
expect some differences
make[3]: Entering directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
running code in 'internet.R' ... OK
comparing 'internet.Rout' to './internet.Rout.save' ...17c17
< [1] 2163
---
> [1] 2088
OK
make[3]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[2]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
make[1]: Leaving directory
`/dev/shm/mvngu/sage-4.3.2.alpha1/spkg/build/r-2.10.1/src/tests'
Now cleaning up tmp files.
Making Sage/Python scripts relocatable...
Making script relocatable
Finished installing r-2.10.1.spkg
}}}
Closing this ticket as fixed by #6532.
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/7090#comment:2>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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