#9857: Upgrade biopython to version 1.55 (released Augest 31, 2010)
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Reporter: mhampton | Owner: tbd
Type: enhancement | Status: new
Priority: major | Milestone: sage-4.6
Component: optional packages | Keywords: biopython
Author: | Upstream: N/A
Reviewer: | Merged:
Work_issues: |
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Comment(by awebb):
Unfortunately, I haven't been able to duplicate that. I get:
{{{
test_Wise ... skipping. Install Wise2 (dnal) if you want to use Bio.Wise.
test_psw ... skipping. Install Wise2 (dnal) if you want to use Bio.Wise.
}}}
but I think this is expected as I don't have Wise2 installed. I also get:
{{{
Bio.Wise docstring test ... ok
Bio.Wise.psw docstring test ... ok
}}}
What I did was to run the commands:
{{{
export SAGE_CHECK="yes"
sage -f biopython-1.55.p0.spkg
}}}
I noticed that that previous installed version was not overwritten. I then
removed the directory and did the install again. This time the new file
was present. The tests again passed.
How did you run the tests?
Adam
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/9857#comment:4>
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