#11880: ISGCI in Sage (a Graph Classes database http://www.graphclasses.org/ )
---------------------------------+------------------------------------------
Reporter: ncohen | Owner: jason, ncohen, rlm
Type: enhancement | Status: positive_review
Priority: major | Milestone: sage-5.0
Component: graph theory | Resolution:
Keywords: | Work issues:
Report Upstream: N/A | Reviewers: Nicolas M. Thiéry
Authors: Nathann Cohen | Merged in:
Dependencies: | Stopgaps:
---------------------------------+------------------------------------------
Changes (by ncohen):
* status: needs_work => positive_review
Old description:
> This ticket creates a file
>
> {{{
> sage/graphs/isgci.py
> }}}
> That is a '''first implementation''' of an interface between Sage and the
> Graph Classes database ISGCI ![1]. With this interface, the XML content
> of the database can be read using dictionaries and lists (much easier to
> work with), and some operations are implemented like the comparison
> (relatively to inclusion) of graph classes.
>
> There will be more work needed on this new feature, for instance the
> implementation of an easy way to query the database.
>
> Along with the patch, two `.sobj` files should be added to the directory
> `$SAGE_ROOT/data/graphs/`. These files are an `.sobj` version of the
> database that I created on my own computer.
>
> When this patch will be merged into Sage, it is likely that users that do
> not update their version of Sage will progressively then be working with
> an outdated version of the database, as the version will be the one used
> the day they downloaded their copy of Sage. To avoid that, this patch
> implements a function `sage.graphs.isgci.update_db()` that downloads a
> new version of the database from ISGCI's website and updates the current
> `.sobj` files.
>
> Hence, instead of using my two files attached to this ticket, one can
> also call this method which will create them automatically.
>
> I tried to make the documentation clear enough about all that is
> currently possible with ISGCI.
>
> One of the discussions on sage-devel related to this database:
> [http://groups.google.com/forum/#!searchin/sage-
> devel/This$20is$20the$20copy$20of$20several$20mails$20concerning$20ISGCI$20and$20what$20we$20could$20do$20with
> /sage-devel/N05a9w_UrIA/XGlVD7NT7p4J]
>
> Nathann
>
> ![1] http://www.graphclasses.org/
>
> ----
> Updated graphs SPKG :
> [http://www.steinertriples.fr/ncohen/graphs-20120328.p3.spkg]
>
> Apply the big meta patch :
>
> * [attachment:trac_11880-ISGCI-all-in-one.patch]
> * [attachment:trac_11880-XML_storage.patch]
>
> Or all of the following :
>
> * [attachment:trac_11880.patch]
> * [attachment:trac_11880-graph_classes-review-nt.patch]
> * [attachment:trac_11880-first_review.patch]
> * [attachment:trac_11880-moving_methods.patch]
> * [attachment:trac_11880-object_oriented.patch]
> * [attachment:trac_11880-isgci-more-review-nt.patch]
> * [attachment:trac_11880-documentation.patch]
>
> Add to SAGE_ROOT/data/graphs/:
>
> * [attachment:isgci_classes.sobj]
> * [attachment:isgci_inclusions.sobj]
New description:
This ticket creates a file
{{{
sage/graphs/isgci.py
}}}
That is a '''first implementation''' of an interface between Sage and the
Graph Classes database ISGCI ![1]. With this interface, the XML content of
the database can be read using dictionaries and lists (much easier to work
with), and some operations are implemented like the comparison (relatively
to inclusion) of graph classes.
There will be more work needed on this new feature, for instance the
implementation of an easy way to query the database.
Along with the patch, two `.sobj` files should be added to the directory
`$SAGE_ROOT/data/graphs/`. These files are an `.sobj` version of the
database that I created on my own computer.
When this patch will be merged into Sage, it is likely that users that do
not update their version of Sage will progressively then be working with
an outdated version of the database, as the version will be the one used
the day they downloaded their copy of Sage. To avoid that, this patch
implements a function `sage.graphs.isgci.update_db()` that downloads a new
version of the database from ISGCI's website and updates the current
`.sobj` files.
Hence, instead of using my two files attached to this ticket, one can also
call this method which will create them automatically.
I tried to make the documentation clear enough about all that is currently
possible with ISGCI.
One of the discussions on sage-devel related to this database:
[http://groups.google.com/forum/#!searchin/sage-
devel/This$20is$20the$20copy$20of$20several$20mails$20concerning$20ISGCI$20and$20what$20we$20could$20do$20with
/sage-devel/N05a9w_UrIA/XGlVD7NT7p4J]
Nathann
![1] http://www.graphclasses.org/
----
Updated graphs SPKG :
[http://www.steinertriples.fr/ncohen/graphs-20120404.p3.spkg]
Apply the big meta patch :
* [attachment:trac_11880-ISGCI-all-in-one.patch]
* [attachment:trac_11880-XML_storage.patch]
Or all of the following :
* [attachment:trac_11880.patch]
* [attachment:trac_11880-graph_classes-review-nt.patch]
* [attachment:trac_11880-first_review.patch]
* [attachment:trac_11880-moving_methods.patch]
* [attachment:trac_11880-object_oriented.patch]
* [attachment:trac_11880-isgci-more-review-nt.patch]
* [attachment:trac_11880-documentation.patch]
Add to SAGE_ROOT/data/graphs/:
* [attachment:isgci_classes.sobj]
* [attachment:isgci_inclusions.sobj]
--
Comment:
Heeeeeeeeeeeere it is ! `:-)`
http://www.steinertriples.fr/ncohen/graphs-20120404.p3.spkg
Nathann
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/11880#comment:46>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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