#11953: Upgrade optional package biopython to version 1.60
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Reporter: mhampton | Owner: tbd
Type: enhancement | Status:
needs_review
Priority: major | Milestone: sage-5.3
Component: optional packages | Resolution:
Keywords: biopython | Work issues:
Report Upstream: N/A | Reviewers:
Authors: Marshall Hampton, John Palmieri | Merged in:
Dependencies: | Stopgaps:
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Changes (by {'newvalue': u'Marshall Hampton, John Palmieri', 'oldvalue':
u'Marshall Hampton'}):
* author: Marshall Hampton => Marshall Hampton, John Palmieri
Old description:
> Biopython 1.59 was released in February, 2012. This ticket was formerly
> for upgrading to version 1.58, but nobody reviewed it. There are
> numerous enhancements since 1.57.
New description:
Biopython 1.60 was released in June, 2012. There are numerous enhancements
since 1.57.
New spkg:
[http://sage.math.washington.edu/home/palmieri/SPKG/biopython-1.60.spkg]
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Comment:
The new spkg builds and passes tests on several platforms. It's an easy
update of an spkg: just drop in a new upstream source. The newest version
has a few small cleanups to the spkg structure, as well.
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Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/11953#comment:5>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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