#10508: Update ATLAS to stable version 3.10
-------------------------------------------------------+--------------------
Reporter: vbraun | Owner: tbd
Type: enhancement | Status:
needs_work
Priority: major | Milestone:
sage-5.3
Component: packages | Resolution:
Keywords: ATLAS | Work issues:
Report Upstream: Reported upstream. No feedback yet. | Reviewers:
Benjamin Jones
Authors: Volker Braun | Merged in:
Dependencies: #13160 | Stopgaps:
-------------------------------------------------------+--------------------
Comment (by kcrisman):
Same symbol not found, all the way at the end. If this is too long let me
know and I'll edit (!) this comment.
{{{
>>> import numpy
import numpy # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/__init__.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/__init__.py
import numpy # precompiled from
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packages/numpy/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/__config__.pyc matches
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packages/numpy/__config__.py
import numpy.__config__ # precompiled from
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packages/numpy/__config__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/version.pyc matches
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packages/numpy/version.py
import numpy.version # precompiled from
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packages/numpy/version.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/_import_tools.pyc matches
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packages/numpy/_import_tools.py
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packages/numpy/_import_tools.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/add_newdocs.pyc matches
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packages/numpy/add_newdocs.py
import numpy.add_newdocs # precompiled from
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packages/numpy/add_newdocs.pyc
import numpy.lib # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/__init__.pyc matches
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packages/numpy/lib/__init__.py
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packages/numpy/lib/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/info.pyc matches
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packages/numpy/lib/info.py
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packages/numpy/lib/info.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/type_check.pyc matches
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packages/numpy/lib/type_check.py
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packages/numpy/lib/type_check.pyc
import numpy.core # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/__init__.pyc matches
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packages/numpy/core/__init__.py
import numpy.core # precompiled from
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packages/numpy/core/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/info.pyc matches
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packages/numpy/core/info.py
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packages/numpy/core/info.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/multiarray.so", 2);
import numpy.core.multiarray # dynamically loaded from
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packages/numpy/core/multiarray.so
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/umath.so", 2);
import numpy.core.umath # dynamically loaded from
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packages/numpy/core/umath.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/_internal.pyc matches
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packages/numpy/core/_internal.py
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packages/numpy/core/_internal.pyc
import numpy.compat # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/compat
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/compat/__init__.pyc matches
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packages/numpy/compat/__init__.py
import numpy.compat # precompiled from
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packages/numpy/compat/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/compat/_inspect.pyc matches
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packages/numpy/compat/_inspect.py
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packages/numpy/compat/_inspect.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
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packages/numpy/compat/py3k.py
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packages/numpy/compat/py3k.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
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packages/numpy/core/_sort.so", 2);
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packages/numpy/core/_sort.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/numeric.pyc matches
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packages/numpy/core/numeric.py
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packages/numpy/core/numeric.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
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packages/numpy/core/arrayprint.pyc matches
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packages/numpy/core/fromnumeric.pyc matches
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packages/numpy/core/fromnumeric.py
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packages/numpy/core/fromnumeric.pyc
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dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/cStringIO.so", 2);
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dynload/cStringIO.so
import cPickle # dynamically loaded from
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dynload/cPickle.so
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packages/numpy/core/records.py
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packages/numpy/core/memmap.py
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packages/numpy/core/memmap.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/scalarmath.so", 2);
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# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/core/function_base.pyc matches
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packages/numpy/core/function_base.py
import numpy.core.function_base # precompiled from
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packages/numpy/core/machar.py
import numpy.core.machar # precompiled from
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packages/numpy/core/machar.pyc
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import numpy.core.getlimits # precompiled from
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import numpy.testing # directory
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import numpy.testing # precompiled from
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# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/StringIO.pyc
matches /Users/student/Desktop/sage-5.3.rc0/local/lib/python/StringIO.py
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# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/unittest/util.pyc
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# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/collections.pyc
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dynload/_collections.so", 2);
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dynload/_collections.so
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/operator.so", 2);
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dynload/operator.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/keyword.pyc matches
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# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/heapq.pyc matches
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import heapq # precompiled from
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dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/itertools.so", 2);
import itertools # dynamically loaded from
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dynload/itertools.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/bisect.pyc matches
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import bisect # precompiled from
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dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/_bisect.so", 2);
import _bisect # dynamically loaded from
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dynload/_bisect.so
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/_heapq.so", 2);
import _heapq # dynamically loaded from
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dynload/_heapq.so
import thread # builtin
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python/functools.pyc
matches /Users/student/Desktop/sage-5.3.rc0/local/lib/python/functools.py
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dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/_functools.so", 2);
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packages/numpy/lib/ufunclike.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/ufunclike.py
import numpy.lib.ufunclike # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/ufunclike.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/index_tricks.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/index_tricks.py
import numpy.lib.index_tricks # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/index_tricks.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/math.so", 2);
import math # dynamically loaded from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/lib-
dynload/math.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/function_base.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/function_base.py
import numpy.lib.function_base # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/function_base.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/twodim_base.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/twodim_base.py
import numpy.lib.twodim_base # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/twodim_base.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/_compiled_base.so", 2);
import numpy.lib._compiled_base # dynamically loaded from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/_compiled_base.so
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/arraysetops.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/arraysetops.py
import numpy.lib.arraysetops # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/arraysetops.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/utils.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/utils.py
import numpy.lib.utils # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/utils.pyc
import numpy.matrixlib # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/__init__.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/__init__.py
import numpy.matrixlib # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/defmatrix.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/defmatrix.py
import numpy.matrixlib.defmatrix # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/matrixlib/defmatrix.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/shape_base.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/shape_base.py
import numpy.lib.shape_base # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/shape_base.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/stride_tricks.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/stride_tricks.py
import numpy.lib.stride_tricks # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/stride_tricks.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/scimath.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/scimath.py
import numpy.lib.scimath # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/scimath.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/polynomial.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/polynomial.py
import numpy.lib.polynomial # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/polynomial.pyc
import numpy.linalg # directory
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/__init__.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/__init__.py
import numpy.linalg # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/__init__.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/info.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/info.py
import numpy.linalg.info # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/info.pyc
# /Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/linalg.pyc matches
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/linalg.py
import numpy.linalg.linalg # precompiled from
/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/linalg.pyc
dlopen("/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/lapack_lite.so", 2);
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/__init__.py", line 136, in <module>
import add_newdocs
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/add_newdocs.py", line 9, in <module>
from numpy.lib import add_newdoc
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/__init__.py", line 13, in <module>
from polynomial import *
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/lib/polynomial.py", line 17, in <module>
from numpy.linalg import eigvals, lstsq
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/__init__.py", line 48, in <module>
from linalg import *
File "/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/linalg.py", line 23, in <module>
from numpy.linalg import lapack_lite
ImportError:
dlopen(/Users/student/Desktop/sage-5.3.rc0/local/lib/python2.7/site-
packages/numpy/linalg/lapack_lite.so, 2): Symbol not found:
_ATL_DecAtomicCount
Referenced from:
/Users/student/Desktop/sage-5.3.rc0/local/lib/libatlas.2.dylib
Expected in: dynamic lookup
}}}
--
Ticket URL: <http://trac.sagemath.org/sage_trac/ticket/10508#comment:189>
Sage <http://www.sagemath.org>
Sage: Creating a Viable Open Source Alternative to Magma, Maple, Mathematica,
and MATLAB
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