Hello,
I'm using samtools view -H (version : 0.1.18) to retrieve the header only and getting the following error : samtools view -H data.bam > data_header.sam [samopen] inconsistent number of target sequences. Output the text header. The header of data.bam contains 117130845 sequences but only 30216898 sequences are written in my output file (data_header.sam). The last line of the output file is "@SQ SN:ARC11SUR1QQSS14UUU.ASY1CTG177062.1 LN:1" instead of "@SQ SN:ARC11SUR1QQSS14UUU.ASY1CTG177062.1 LN:138". Is there a known issue regarding this? Thanks, Alexis Bertrand
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