Hello all, When running samtools sort to sort a large number of bam files using the following line:
> samtools sort -T sorting -O bam -o $outfile $infile I get the following error messages printed to the screen: > [bam_sort_core] merging from 2 files... > [bam_translate] PG tag "A" on read "1_1101_10360_49339_1" encountered with no > corresponding entry in header, tag lost The number of reads appears to remain the same between the sorted/unsorted bams. Can anyone give any insight into what this means? Many thanks Mark ------------------------------------------------ Mark Ravinet Postdoctoral Research Fellow Ecological Genetics Laboratory National Institute of Genetics Yata 1111, Mishima, Shizuoka 411-8540, Japan Email: mravi...@nig.ac.jp Skype: mark.ravinet +44 (0) 7841 67 58 63 (UK) +81 (0) 90 7211 3590 (Japan) ------------------------------------------------
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