Hi Mark, Which version of samtools was this?
Peter On Wed, Nov 5, 2014 at 3:44 AM, Mark Ravinet <mravi...@nig.ac.jp> wrote: > Hello all, > > When running samtools sort to sort a large number of bam files using the > following line: > > samtools sort -T sorting -O bam -o $outfile $infile > > > I get the following error messages printed to the screen: > > [bam_sort_core] merging from 2 files... > [bam_translate] PG tag "A" on read "1_1101_10360_49339_1" encountered with > no corresponding entry in header, tag lost > > > The number of reads appears to remain the same between the sorted/unsorted > bams. Can anyone give any insight into what this means? > > Many thanks > > Mark > ------------------------------------------------ > Mark Ravinet > Postdoctoral Research Fellow > Ecological Genetics Laboratory > National Institute of Genetics > Yata 1111, Mishima, Shizuoka > 411-8540, Japan > Email: mravi...@nig.ac.jp > Skype: mark.ravinet > +44 (0) 7841 67 58 63 (UK) > +81 (0) 90 7211 3590 (Japan) > ------------------------------------------------ > > > ------------------------------------------------------------------------------ > > _______________________________________________ > Samtools-help mailing list > Samtools-help@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/samtools-help > ------------------------------------------------------------------------------ _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
