I am trying to install Samtools and I keep getting the error below. What
can I do to fix it?:

./libbam.a(bam_import.o): In function `ks_getuntil':
/home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread'
./libbam.a(bam_import.o): In function `bam_load_pos':
/home/stine/samtools-0.1.1/bam_import.c:51: undefined reference to `gzdopen'
./libbam.a(bam_import.o): In function `ks_getc':
/home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread'
./libbam.a(bam_import.o): In function `bam_load_pos':
/home/stine/samtools-0.1.1/bam_import.c:51: undefined reference to
`gzopen64'
./libbam.a(bam_import.o): In function `sam_header_read2':
/home/stine/samtools-0.1.1/bam_import.c:103: undefined reference to
`gzdopen'
./libbam.a(bam_import.o): In function `ks_getc':
/home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread'
./libbam.a(bam_import.o): In function `sam_header_read2':
/home/stine/samtools-0.1.1/bam_import.c:119: undefined reference to
`gzclose'
/home/stine/samtools-0.1.1/bam_import.c:103: undefined reference to
`gzopen64'
./libbam.a(bam_import.o): In function `sam_open':
/home/stine/samtools-0.1.1/bam_import.c:320: undefined reference to
`gzdopen'
/home/stine/samtools-0.1.1/bam_import.c:320: undefined reference to
`gzopen64'
./libbam.a(bam_import.o): In function `sam_close':
/home/stine/samtools-0.1.1/bam_import.c:330: undefined reference to
`gzclose'
./libbam.a(bgzf.o): In function `deflate_block':
/home/stine/samtools-0.1.1/bgzf.c:206: undefined reference to `deflate'
/home/stine/samtools-0.1.1/bgzf.c:208: undefined reference to `deflateEnd'
/home/stine/samtools-0.1.1/bgzf.c:200: undefined reference to
`deflateInit2_'
/home/stine/samtools-0.1.1/bgzf.c:224: undefined reference to `deflateEnd'
/home/stine/samtools-0.1.1/bgzf.c:240: undefined reference to `crc32'
/home/stine/samtools-0.1.1/bgzf.c:241: undefined reference to `crc32'
./libbam.a(bgzf.o): In function `inflate_block':
/home/stine/samtools-0.1.1/bgzf.c:274: undefined reference to
`inflateInit2_'
/home/stine/samtools-0.1.1/bgzf.c:279: undefined reference to `inflate'
/home/stine/samtools-0.1.1/bgzf.c:285: undefined reference to `inflateEnd'
./libbam.a(bgzf.o): In function `read_block':
/home/stine/samtools-0.1.1/bgzf.c:281: undefined reference to `inflateEnd'
./libbam.a(bam_maqcns.o): In function `cal_coef':
/home/stine/samtools-0.1.1/bam_maqcns.c:68: undefined reference to `pow'
/home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:75: undefined reference to `pow'
/home/stine/samtools-0.1.1/bam_maqcns.c:76: undefined reference to `log'
/home/stine/samtools-0.1.1/bam_maqcns.c:77: undefined reference to `log'
/home/stine/samtools-0.1.1/bam_maqcns.c:82: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:87: undefined reference to `logl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl'
./libbam.a(bam_maqcns.o): In function `cal_het':
/home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma'
/home/stine/samtools-0.1.1/bam_maqcns.c:41: undefined reference to `log'
/home/stine/samtools-0.1.1/bam_maqcns.c:42: undefined reference to `log'
/home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl'
/home/stine/samtools-0.1.1/bam_maqcns.c:45: undefined reference to `logl'
/home/stine/samtools-0.1.1/bam_maqcns.c:51: undefined reference to `log'
./libbam.a(razf.o): In function `_razf_write':
/home/stine/samtools-0.1.1/razf.c:140: undefined reference to `deflate'
./libbam.a(razf.o): In function `razf_open_w':
/home/stine/samtools-0.1.1/razf.c:113: undefined reference to
`deflateInit2_'
/home/stine/samtools-0.1.1/razf.c:129: undefined reference to
`deflateSetHeader'
./libbam.a(razf.o): In function `razf_open_r':
/home/stine/samtools-0.1.1/razf.c:300: undefined reference to
`inflateInit2_'
/home/stine/samtools-0.1.1/razf.c:301: undefined reference to `inflateEnd'
./libbam.a(razf.o): In function `_razf_read':
/home/stine/samtools-0.1.1/razf.c:433: undefined reference to `inflate'
./libbam.a(razf.o): In function `razf_flush':
/home/stine/samtools-0.1.1/razf.c:165: undefined reference to `deflate'
./libbam.a(razf.o): In function `_razf_reset_read':
/home/stine/samtools-0.1.1/razf.c:536: undefined reference to `inflateReset'
/home/stine/samtools-0.1.1/razf.c:536: undefined reference to `inflateReset'
./libbam.a(razf.o): In function `razf_close':
/home/stine/samtools-0.1.1/razf.c:629: undefined reference to `inflateEnd'
./libbam.a(razf.o): In function `razf_end_flush':
/home/stine/samtools-0.1.1/razf.c:185: undefined reference to `deflate'
./libbam.a(razf.o): In function `razf_close':
/home/stine/samtools-0.1.1/razf.c:617: undefined reference to `deflateEnd'
collect2: error: ld returned 1 exit status
make[1]: *** [samtools] Error 1
make[1]: Leaving directory `/home/stine/samtools-0.1.1'
make: *** [all-recur] Error 1
------------------------------------------------------------------------------
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help

Reply via email to