I am trying to install Samtools and I keep getting the error below. What can I do to fix it?:
./libbam.a(bam_import.o): In function `ks_getuntil': /home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread' ./libbam.a(bam_import.o): In function `bam_load_pos': /home/stine/samtools-0.1.1/bam_import.c:51: undefined reference to `gzdopen' ./libbam.a(bam_import.o): In function `ks_getc': /home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread' ./libbam.a(bam_import.o): In function `bam_load_pos': /home/stine/samtools-0.1.1/bam_import.c:51: undefined reference to `gzopen64' ./libbam.a(bam_import.o): In function `sam_header_read2': /home/stine/samtools-0.1.1/bam_import.c:103: undefined reference to `gzdopen' ./libbam.a(bam_import.o): In function `ks_getc': /home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to `gzread' ./libbam.a(bam_import.o): In function `sam_header_read2': /home/stine/samtools-0.1.1/bam_import.c:119: undefined reference to `gzclose' /home/stine/samtools-0.1.1/bam_import.c:103: undefined reference to `gzopen64' ./libbam.a(bam_import.o): In function `sam_open': /home/stine/samtools-0.1.1/bam_import.c:320: undefined reference to `gzdopen' /home/stine/samtools-0.1.1/bam_import.c:320: undefined reference to `gzopen64' ./libbam.a(bam_import.o): In function `sam_close': /home/stine/samtools-0.1.1/bam_import.c:330: undefined reference to `gzclose' ./libbam.a(bgzf.o): In function `deflate_block': /home/stine/samtools-0.1.1/bgzf.c:206: undefined reference to `deflate' /home/stine/samtools-0.1.1/bgzf.c:208: undefined reference to `deflateEnd' /home/stine/samtools-0.1.1/bgzf.c:200: undefined reference to `deflateInit2_' /home/stine/samtools-0.1.1/bgzf.c:224: undefined reference to `deflateEnd' /home/stine/samtools-0.1.1/bgzf.c:240: undefined reference to `crc32' /home/stine/samtools-0.1.1/bgzf.c:241: undefined reference to `crc32' ./libbam.a(bgzf.o): In function `inflate_block': /home/stine/samtools-0.1.1/bgzf.c:274: undefined reference to `inflateInit2_' /home/stine/samtools-0.1.1/bgzf.c:279: undefined reference to `inflate' /home/stine/samtools-0.1.1/bgzf.c:285: undefined reference to `inflateEnd' ./libbam.a(bgzf.o): In function `read_block': /home/stine/samtools-0.1.1/bgzf.c:281: undefined reference to `inflateEnd' ./libbam.a(bam_maqcns.o): In function `cal_coef': /home/stine/samtools-0.1.1/bam_maqcns.c:68: undefined reference to `pow' /home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:73: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:75: undefined reference to `pow' /home/stine/samtools-0.1.1/bam_maqcns.c:76: undefined reference to `log' /home/stine/samtools-0.1.1/bam_maqcns.c:77: undefined reference to `log' /home/stine/samtools-0.1.1/bam_maqcns.c:82: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:87: undefined reference to `logl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:90: undefined reference to `logl' ./libbam.a(bam_maqcns.o): In function `cal_het': /home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:38: undefined reference to `lgamma' /home/stine/samtools-0.1.1/bam_maqcns.c:41: undefined reference to `log' /home/stine/samtools-0.1.1/bam_maqcns.c:42: undefined reference to `log' /home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:43: undefined reference to `expl' /home/stine/samtools-0.1.1/bam_maqcns.c:45: undefined reference to `logl' /home/stine/samtools-0.1.1/bam_maqcns.c:51: undefined reference to `log' ./libbam.a(razf.o): In function `_razf_write': /home/stine/samtools-0.1.1/razf.c:140: undefined reference to `deflate' ./libbam.a(razf.o): In function `razf_open_w': /home/stine/samtools-0.1.1/razf.c:113: undefined reference to `deflateInit2_' /home/stine/samtools-0.1.1/razf.c:129: undefined reference to `deflateSetHeader' ./libbam.a(razf.o): In function `razf_open_r': /home/stine/samtools-0.1.1/razf.c:300: undefined reference to `inflateInit2_' /home/stine/samtools-0.1.1/razf.c:301: undefined reference to `inflateEnd' ./libbam.a(razf.o): In function `_razf_read': /home/stine/samtools-0.1.1/razf.c:433: undefined reference to `inflate' ./libbam.a(razf.o): In function `razf_flush': /home/stine/samtools-0.1.1/razf.c:165: undefined reference to `deflate' ./libbam.a(razf.o): In function `_razf_reset_read': /home/stine/samtools-0.1.1/razf.c:536: undefined reference to `inflateReset' /home/stine/samtools-0.1.1/razf.c:536: undefined reference to `inflateReset' ./libbam.a(razf.o): In function `razf_close': /home/stine/samtools-0.1.1/razf.c:629: undefined reference to `inflateEnd' ./libbam.a(razf.o): In function `razf_end_flush': /home/stine/samtools-0.1.1/razf.c:185: undefined reference to `deflate' ./libbam.a(razf.o): In function `razf_close': /home/stine/samtools-0.1.1/razf.c:617: undefined reference to `deflateEnd' collect2: error: ld returned 1 exit status make[1]: *** [samtools] Error 1 make[1]: Leaving directory `/home/stine/samtools-0.1.1' make: *** [all-recur] Error 1
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