Hi John and Devon, I didn't realize that's what I was doing. I will try installing the 1.1 version instead. Thanks so much!
Regards, Shana On Fri, Nov 7, 2014 at 6:04 AM, John Marshall <j...@sanger.ac.uk> wrote: > On 6 Nov 2014, at 19:15, Shana Burrowes <shana.burro...@gmail.com> wrote: > > I am trying to install Samtools and I keep getting the error below. What > can I do to fix it?: > > > > ./libbam.a(bam_import.o): In function `ks_getuntil': > > /home/stine/samtools-0.1.1/bam_import.c:12: undefined reference to > `gzread' > [etc] > > Your problem is that you are trying to compile the first ever release of > samtools, namely 0.1.1 from six years ago. This release had a problem in > its makefile that causes these failures on Linux distributions released in > the last three years or so. > > You probably want to install the current 1.1 release instead. > > Cheers, > > John > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. >
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