Greetings samtools-list members,
I'm assisting an associate with some calculations, and we've run into some
problems with samtools.
What I'm trying to do is to generate a .bai index file but I get the
following error message:
NO_COOR reads not in a single block at the end 0 -1
I found the suggestion to add -c to samtools which did not help. I also
found at http://sourceforge.net/p/samtools/mailman/message/33155863/ the
suggestion that samtools only supports chromosome length of 512Mbp for
index generation. However our longest chromosome is +248Mbp, far from
512Mbp.
Any help would be appreciated!
Cheers,
/Stefan
------------------------------------------------------------------------------
Dive into the World of Parallel Programming. The Go Parallel Website,
sponsored by Intel and developed in partnership with Slashdot Media, is your
hub for all things parallel software development, from weekly thought
leadership blogs to news, videos, case studies, tutorials and more. Take a
look and join the conversation now. http://goparallel.sourceforge.net/
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help
