Hello,
I have individual vcf files of indels and want to merge them into a big
one, but only extract chromosome 3,4,5,7,8. The list of vcf files is
in round1_indel.txt.
What I did is:
bcftools merge -l round1_indel.txt -o round1_indel.vcf -r 3,4,5,7,8
However, the output is only for chromosome 3. The document file for
bcftools say the -r option is separate by comma. I also tried -r 4,5,7,8,
but it only outputs results for chromosome 4. I don't think it's taking in
multiple argument for chromosome number.
Could anyone help me with this? Thank you so much!!
--
Best,
Pengyao Jiang
University of Chicago
Ecology & Evolution
------------------------------------------------------------------------------
Dive into the World of Parallel Programming The Go Parallel Website, sponsored
by Intel and developed in partnership with Slashdot Media, is your hub for all
things parallel software development, from weekly thought leadership blogs to
news, videos, case studies, tutorials and more. Take a look and join the
conversation now. http://goparallel.sourceforge.net/
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help
