Anybody have any solution. This has been there since version 1.0. Had to switch
to alternatives, but looking forward to using samtools rmdup again :)
Thanks
> On Mar 20, 2015, at 7:06 AM, Matteo Manca - Malattie Rare Sardegna
> <matteoma...@malattieraresardegna.it> wrote:
>
> Hi all,
> I'm trying to remove duplicates from my bam file (paired end reads, aligned
> with bwa mem algorithm) using the following command
>
> "samtools rmdup bamfile_sorted bam_no_duplicates".
>
> Unfortunately, I got the "bam_get_library() not yet implemented" error.
>
> Any suggestion?
>
> Thanks in advance,
>
> Matteo
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