On Thu, Jan 14, 2016 at 11:13:53PM +1000, Robert May wrote:
> gcc -pthread -o samtools bam_index.o bam_plcmd.o sam_view.o bam_cat.o
> bam_md.o bam_reheader.o bam_sort.o bedidx.o kprobaln.o bam_rmdup.o
> bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk
> .o bam2bcf.o bam2bcf_indel.o
> errmod.o sample.o sam_opts.o cut_target.o phase.o bam2depth.o padding.o
> bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o
> bam_split.o bam_tview.o
> bam_tview_curses.o bam_tview_html.o bam_lpileup.o
> bam_quickcheck.o bam_addrprg.o libbam.a htslib-1.3/libhts.a -lncursesw -lm
> -lz -ldl
> errmod.o: In function `cal_coef':
> /usr/local/bin/samtools-1.3/errmod.c:85: undefined reference to `expl'
> /usr/local/bin/samtools-1.3/errmod.c:85:(.text+0xc81): relocation truncated
> to fit: R_X86_64_PC32 against undefined symbol `expl'
> /usr/local/bin/samtools-1.3/errmod.c:86: undefined reference to `logl'
> /usr/local/bin/samtools-1.3/errmod.c:86:(.text+0xca5): relocation truncated
> to fit: R_X86_64_PC32 against undefined symbol `logl'
> collect2: error: ld returned 1 exit status
> Makefile:139: recipe for target 'samtools' failed
> make: *** [samtools] Error 1
The linux man pages for expl and logl seeems to imply that
./configure CFLAGS=-std=c99 should be sufficient to get this working.
I haven't tested it though, but either way the configure script will
need these additional functions adding and some checks for how to
enable them.
James
--
James Bonfield (j...@sanger.ac.uk) | Hora aderat briligi. Nunc et Slythia Tova
| Plurima gyrabant gymbolitare vabo;
A Staden Package developer: | Et Borogovorum mimzebant undique formae,
https://sf.net/projects/staden/ | Momiferique omnes exgrabure Rathi.
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
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