Messages by Thread
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[Samtools-help] per-file depth in samtools mpileup
Jing meng
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[Samtools-help] Unexpected insert-size distribution given by samtools stats
Dr . Frank Vorhölter
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[Samtools-help] a question about bcftools
??an????
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[Samtools-help] mpileup returns empty vcf file
Shreyasi Biswas
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[Samtools-help] warnings with htslib on MacOS
Richard Durbin
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[Samtools-help] Question about the reference for samtools
Haider, Marlene
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[Samtools-help] Question about BEDTools BEDPE format versus Samtools view -L option
Braulio Valdebenito Maturana
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[Samtools-help] Calling indels with noisy reads
Jody Phelan
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[Samtools-help] Tabix -R extracts a region given a bed file
Ming Liu
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[Samtools-help] Bug in tabix: ignores 0-based (-0) option.
Heredia Genestar, Txema
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[Samtools-help] samtools view -L option
RITSUKO OIKAWA
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[Samtools-help] calmd and lower case characters
ernesto.picardi
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[Samtools-help] Release 1.8
Robert Davies
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[Samtools-help] Extremely long reference sequences
Nowoshilow,Sergej
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[Samtools-help] samtools pileup format: insertions and deletions' quality
Jing meng
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[Samtools-help] mpileup output (base column)
Nicholas Hill
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[Samtools-help] question about how to use the option of --rf in samtools mpileup
Jing meng
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[Samtools-help] BCFtools 1.7
Robert Davies
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[Samtools-help] REF_CACHE
Brent Pedersen
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[Samtools-help] Bcftools indel filtering
James Bonfield
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[Samtools-help] sort sam file using samtools sort
Yogesh Gupta
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Re: [Samtools-help] samtools view error: convert SAM to BAM fail silently (fwd)
Robert Davies
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[Samtools-help] samtools view error: convert SAM to BAM fail silently
Hu Jing
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[Samtools-help] Error when installing samtools-1.6 (error: âSAMTOOLS_VERSIONâ undeclared (first use in this function)
Lidia Lasecka
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[Samtools-help] CSI stats bins
Brent Pedersen
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[Samtools-help] Changing I16 calculation in mpileup
Emily W
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[Samtools-help] Option -a in mpileup does not work with output option --VCF
Anna Quaglieri
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[Samtools-help] samtool installation
k.scharf
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Re: [Samtools-help] Samtools-help Digest, Vol 106, Issue 7
VIB | Stephane Plaisance
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[Samtools-help] samtools/libbam.a undefined reference
Nicholas Kline
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[Samtools-help] Issue Building htslib and samtools 1.6 on HighSierra OSX 10.13.1
VIB | Stephane Plaisance
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[Samtools-help] help installing samtools
Ricardo Fong Zazueta
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[Samtools-help] samtools truncated file and Exec format error
Tommy Carstensen
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[Samtools-help] Understanding indel format
Mulini Reddy Pingili, GW/US
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[Samtools-help] questions on "samtools mpileup count of reads"
????
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[Samtools-help] Release 1.6
Robert Davies
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[Samtools-help] samtools-help mailing list (tabix is part of the samtools project).
????????
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[Samtools-help] csi index while bgzipping
Brent Pedersen
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[Samtools-help] Understanding the output of the samtools variant calling pipeline
Niklas Mather
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Re: [Samtools-help] Samtools-help Digest, Vol 104, Issue 1
Stephane Plaisance | VIB |
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[Samtools-help] use tabix with multi-chromosome file
Alan Achenbach
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[Samtools-help] Generating a consensus sequence
Juma, John
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[Samtools-help] samtools rmdup: inconsistent bam file for paired-end reads
Qian Li
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[Samtools-help] hts_set_threads for n==1
Brent Pedersen
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[Samtools-help] Merging VCF files with bcftools
Hans Vasquez-Gross
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[Samtools-help] no output when sort bam files by read names
Yan Li
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[Samtools-help] variant call difference between bcftools 1.3.1 and 1.5
Adam Witney
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[Samtools-help] samtools mpileup / bcftools mpileup / missing sites
Kristian Ullrich
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[Samtools-help] Using Samtools as a Dependency: Getting a large amount of binary in terminal window
Amelia Lawrence
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[Samtools-help] additional header lines "@GA"
Gerben Menschaert
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Re: [Samtools-help] Samtools-help Digest, Vol 101, Issue 4
Stephane Plaisance
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[Samtools-help] Help with mpileup
Maraike Probst
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[Samtools-help] [Samtools-devel] Release 1.5
Valeriu Ohan
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[Samtools-help] Rare variants calling
Jody Phelan
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[Samtools-help] Install problems
Matt Evans
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[Samtools-help] Ssage of samtools pileup -c -f in new version of samtools mpileup
YaoXia
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[Samtools-help] Unable to view remote bam files from 1000genomes
Andrew Maksymowsky
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[Samtools-help] samtools merge issue
Margres, Mark J
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[Samtools-help] crai
Brent Pedersen
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[Samtools-help] Compile error htslib-1.4.1
Waldron, Michael H
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[Samtools-help] Predicted het GT where hom alt expected
urs . lahrmann
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[Samtools-help] hts_itr_t reuse
clw
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[Samtools-help] phased vcf from phased Bam
Shilpa Garg
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[Samtools-help] rmdup question
oscar.migue...@mdc-berlin.de
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[Samtools-help] error messages when using the fixref plugin
Jin, Ying
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[Samtools-help] compile help
James LaGasse
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[Samtools-help] ERR: [bam_header_read] EOF marker is absent. The input is probably truncated
Zhiliang Hu
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[Samtools-help] Help in calling indel
Fox, Dylan
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[Samtools-help] help for samtools
王玥
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[Samtools-help] bams with malformed region names lead to variant calls using -l to be incorrect
Liyang Diao
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[Samtools-help] query about mpileup and bcftool calls
Prasun Dutta
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[Samtools-help] some samtools commands require sorted input - is the output guaranteed to be still in the same sort order?
Anton Kratz
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[Samtools-help] how to uninstall
scar
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[Samtools-help] bgzip file index and fasta file
sebastien letort
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[Samtools-help] read alignment number limitation shown in samtools tview
huyudong
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[Samtools-help] Is there a way how I can figure out how many reads have been removed by applying rmdup?
Anton Kratz
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[Samtools-help] BCF2.2 and VCF version interop
Chris Norman
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[Samtools-help] Samtols paired call variant
jarod...@libero.it
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[Samtools-help] Problem Converting BAM to SAM on to Amazon-S3 Using Samtools
Gundala Viswanath
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[Samtools-help] "Strand bias" in mutation calling with samtools-bcftools
Jiri Nehyba