The "samtools fastq" command is new in samtools v1.3. Peter
On Thu, Jan 14, 2016 at 5:09 PM, Bob Harris <rshar...@bx.psu.edu> wrote: > Maybe whatever version of samtools you have doesn't support that. If you > run samtools with no arguments it will give you a similar list showing the > commands it supports. > > Bob H > > > On Jan 14, 2016, at 10:05 AM, carol white wrote: > > Hi, > It might be trivial but I tried to use > samtools fastq bamFile > > and got > > [main] unrecognized command 'fastq' > > Can samtools fastq be invoked as it is or should the doc > http://www.htslib.org/doc/samtools.html have been understood differently? > > Regards, > > Carol > > > ------------------------------------------------------------------------------ > Site24x7 APM Insight: Get Deep Visibility into Application Performance > APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month > Monitor end-to-end web transactions and take corrective actions now > Troubleshoot faster and improve end-user experience. Signup Now! > http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 > _______________________________________________ > Samtools-help mailing list > Samtools-help@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/samtools-help > ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
