Hello support, I am merging VCF files with bcftools merge using this command:
bcftools merge --info-rules NS:sum -o outFilePath dir/*.gz Previously, using bcftools 1.1, the output VCF file contained one row per position, like this: #CHROM POS ID REF ALT QUAL FILTER INFO barref 1094 . A G . PASS NS=24 barref 1221 . G A . PASS NS=24 barref 2015 . G A . PASS NS=24 Using newer version of bcftools 1.2 or 1.3.1, I am seeing two rows per position, like this: #CHROM POS ID REF ALT QUAL FILTER INFO barref 1094 . A . . PASS NS=20 barref 1094 . A G . PASS NS=4 barref 1221 . G . . PASS NS=20 barref 1221 . G A . PASS NS=4 barref 2015 . G . . PASS NS=20 barref 2015 . G A . PASS NS=4 How can I get one row of output per position when using bcftools 1.2 or higher? Thanks, Steve Davis Office of Analytics and Outreach FDA Center for Food Safety and Applied Nutrition 5100 Paint Branch Pkwy College Park, MD 20740 Office: 240-402-4834
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