Hello,
I am trying to get all nucleotides for specific position from mpileup
output. I wrote a simple parser that solves special chars like ^, *, -, +
even though it works great, this method looks like very fragile to me.
I am wondering instead of solving these special characters by myself, how
can i tell samtools to solve those and only report me ATCGN ?
Al the best,
Ozcan
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