On Mon, May 08, 2017 at 08:25:52PM +0000, Waldron, Michael H wrote:
> I am getting the following error when trying to compile htslib-1.4.1 on our
> RHEL-5 based cluster:
Try compiling with CFLAGS="-D_XOPEN_SOURCE=600 -g -O2", possibly you
will also need to add -std=c99 in there. Recursive mutexes are part
of POSIX, but RHEL 5 is a 10 year old system so it may not have been a
default part of the OS. The fact the old code built meant that your
OS supports this, but it's not enabled by default.
This is something we should put a fix for in the configure script,
assuming there isn't one there already. (Did you try ./configure
first?)
Regards,
James
--
James Bonfield (j...@sanger.ac.uk) | Hora aderat briligi. Nunc et Slythia Tova
| Plurima gyrabant gymbolitare vabo;
A Staden Package developer: | Et Borogovorum mimzebant undique formae,
https://sf.net/projects/staden/ | Momiferique omnes exgrabure Rathi.
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