Hello,
I am trying to install samtools on Mac OS X El Capitan 10.11.6.
Downloading samtools-1.4.1 from http://www.htslib.org/download/
<http://www.htslib.org/download/>, I run the following commands:
./configure --disable-lzma # I did this because I was getting an error without
it, and the INSTALL guide recommended this.
make
make prefix=usr/local install
This runs fine without any error messages, but when I look at what’s sitting in
the resulting bin folder, only a limited selection of tools are there (below),
and trying to execute them results in a ‘command not found’ error message.
ace2sam* md5fa* samtools.pl*
blast2sam.pl* md5sum-lite* seq_cache_populate.pl*
bowtie2sam.pl* novo2sam.pl* soap2sam.pl*
export2sam.pl* plot-bamstats* varfilter.py*
interpolate_sam.pl* psl2sam.pl* wgsim*
maq2sam-long* sam2vcf.pl* wgsim_eval.pl*
maq2sam-short* samtools* zoom2sam.pl*
Could anybody help me with this?
Many thanks,
Matt
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
Samtools-help mailing list
Samtools-help@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/samtools-help
