Hello, I am attempting to convert a BAM file to a CRAM file in order to cut down on storage needs. The program has been running for over 3 days now and I'm wondering if that is to be expected or if I did something wrong.
I am running samtools-1.3.1 and I used the following command samtools view -T <path to reference .fasta> -C -o <path to output .cram file> <path to input .bam file> The input .bam file is about 96Gb. Thanks for your help.
_______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help