On Wed, Mar 10, 2021 at 04:04:52PM -0500, Remik Ziemlinski wrote: > The attached file worked with version 1.9, but is failing with 1.10 and > 1.11. Is the file valid? Is there a regression after v1.9?
No, the file is not valid. The HD line contains spaces instead of tabs. > @HD VN:1.6 SO::unsorted We added the header parser API in 1.10 the header, which is more strict at validating the input data. Arguably it could have been more friendly in error message, but I recommend just opening it in a text editor or using "hd" to look at the bytes to spot white space problems. James -- James Bonfield (j...@sanger.ac.uk) The Sanger Institute, Hinxton, Cambs, CB10 1SA -- The Wellcome Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Samtools-help mailing list Samtools-help@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/samtools-help
